Job Description P06864 Confidence 30.20% Date Thu Jan 5 10:59:27 GMT 2012 Rank 252 Aligned Residues 97 % Identity 14% Template d1pgsa2 SCOP info Nucleoplasmin-like/VP (viral coat and capsid proteins) PHM/PNGase F Glycosyl-asparaginase Resolution 1.80

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																		140	.	.	.	.	.	.	.	.																													.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	F	T	L	S	D	G	W	Q	G	K	Q	T	L	I	K	F	D	G	V	E	T	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	Y	V	N	G	Q	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	I	Q	L	P	T	N	T	E	K	A	Y	L	R	T	T	I	S	G	W	G	H	A	K	P	Y	D	A	G	S	R	G	C	A	E	W	C	F	R	T	H	T	I	A	I	N	N	A	N	T	F	Q	H	Q	L	G	A	L	G	C	S	A	N	P	I	N	N	Q	S	P	G	N	W	T	P	D	R	A	G
Template Known Secondary structure								T	T		S																			T	T	T					T	T	S									T	T													G	G	G		S					T	T	S			S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		F	S	K	G	S	R	L	T	A	E	F	D	I	S	A	M	V	K	T	G	.	D	N	L	L	C	V	R	V	M	Q	W	A	D	S	T	Y	V	E	D	Q	D	M	W	W	S	A	G	I	F	R	D	V	Y	L	V	G	K	H	L	T	H	I	N	D	F	T	V	R
Query Conservation																						.
Alig confidence																						.								.																			.	.	.	.	.
Template Conservation																														.																			.	.	.	.	.
Template Sequence		W	C	P	G	M	A	V	P	T	R	I	D	V	L	N	N	S	L	T	G	S	T	F	S	Y	E	Y	K	.	F	Q	S	W	T	N	N	G	T	N	G	D	A	F	Y	A	I	S	.	.	.	.	.	S	F	V	I	A	K	S	N	T	P	I	S	A	P	V	V	T
Template Known Secondary structure				T	T	S											G	G	G	T	T	S								.								S	S	S									.	.	.	.	.								S	S
Template Predicted Secondary structure																														.																			.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions