Job Description P06864 Confidence 99.85% Date Thu Jan 5 10:59:27 GMT 2012 Rank 43 Aligned Residues 266 % Identity 18% Template c3thdD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin Resolution 1.79 Å

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		318	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.						.	.	.	.	.	380
Predicted Secondary structure							.	.																																																					.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																																					.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	I	K	V	.	.	R	D	G	L	F	W	I	N	N	R	Y	V	M	L	H	G	V	N	R	H	D	N	D	H	R	K	G	R	A	V	G	M	D	R	V	E	K	D	L	Q	L	M	K	Q	H	N	I	N	S	V	R	T	.	.	.	.	.	A	H	Y	P	N	D	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.																																																					.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																							.	.	.	.	.	.																									.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.
Template Sequence		R	M	F	E	I	D	Y	S	R	D	S	F	L	K	D	G	Q	P	F	R	Y	I	S	G	S	I	H	Y	S	.	.	.	.	.	.	R	V	P	R	F	Y	W	K	D	R	L	L	K	M	K	M	A	G	L	N	A	I	Q	T	Y	V	P	W	N	F	H	E	P	W	P	G	Q	Y	Q	F	S	E	D	H	D
Template Known Secondary structure								T	T	T	T					T	T												G	G	.	.	.	.	.	.	G	S		G	G	G											T	T		S													S	B	T	T	B				S	G	G	G
Template Predicted Secondary structure																															.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
			381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.											410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.						.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure		.																														.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence		.																														.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		.	P	R	F	Y	E	L	C	D	I	Y	G	L	F	V	M	A	E	T	D	V	E	S	H	G	F	A	N	V	G	.	.	.	.	.	.	.	.	.	.	D	I	S	R	I	T	D	D	P	Q	W	E	K	V	Y	V	E	R	I	V	R	H	I	H	A	.	.	.	.	.	Q	K	N	H	P	S	I	I	I	W
Query Conservation		.																														.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Alig confidence		.																														.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		V	E	Y	F	L	R	L	A	H	E	L	G	L	L	V	I	L	R	P	G	P	Y	I	C	A	E	W	E	M	G	G	L	P	A	W	L	L	E	K	E	S	I	L	L	R	S	S	D	P	D	Y	L	A	A	V	D	K	W	L	G	V	L	L	P	K	M	K	P	L	L	Y	Q	N	G	G	P	V	I	T	V
Template Known Secondary structure												T	T									S				T	T	B	G	G	G	G			G	G	G	G	G	S	T	T			S	S	S																					G	G	G	B	G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		445	.	.	.	.	450	.	.	.						.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.	.	480													.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.														.															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.														.															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	G	N	E	S	G	Y	G	.	.	.	.	.	C	N	I	R	A	M	Y	H	A	A	K	A	L	.	D	D	T	R	L	V	H	Y	E	E	D	R	D	A	.	.	.	.	.	.	.	.	.	.	.	.	E	V	V	D	I	I	S	T	M	Y	T	R	V	P	L	M	N	E	F	G	E	Y	P	H	P	K
Query Conservation											.	.	.	.	.														.															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.														.															.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																																	.
Template Sequence		Q	V	E	N	E	Y	G	S	Y	F	A	C	D	F	D	Y	L	R	F	L	Q	K	R	F	R	H	H	L	G	D	D	V	V	L	F	T	T	D	G	A	H	K	T	F	L	K	C	G	A	L	Q	G	L	Y	T	T	V	D	F	G	T	G	S	.	N	I	T	D	A	F	L	S	Q	R	K	C	E	P	K	G
Template Known Secondary structure				S	S		G	G	G	S	S																				S	S	S								S	S										T	T	S								T	T	S	.														S	S	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.										.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		P	R	I	I	C	E	Y	A	H	A	M	G	N	G	P	G	G	L	T	E	Y	Q	N	V	F	Y	K	H	D	C	I	Q	G	H	Y	V	W	E	W	C	D	H	G	I	Q	A	Q	D	D	H	G	N	V	W	Y	K	F	G	G	D	Y	G	D	Y	P	N	N	Y	N	.	.	.	.	.	.	.	.	.	F	C
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																									.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.																									.	.	.	.	.
Template Sequence		P	L	I	N	S	E	F	Y	T	G	W	L	D	H	W	G	Q	.	.	.	.	.	P	H	S	T	I	K	T	E	A	V	A	S	S	L	Y	D	I	L	A	R	G	A	S	V	.	.	.	.	.	N	L	Y	M	F	I	G	G	T	N	F	A	Y	W	N	G	A	N	S	P	Y	A	A	Q	P	T	S	Y	D
Template Known Secondary structure										S	S					T	T	S	.	.	.	.	.																				T	T				.	.	.	.	.					S	B			B			T	T		B				T	T	T					S	B
Template Predicted Secondary structure																			.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	G	L	I	Y	S	D	Q	T	P	G	P	G	L	K	E	Y	K	Q	V	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	A	P	L	S	E	A	G	D	L	T	E	K	Y	F	A	L	R	N	I	I	Q
Template Known Secondary structure		T	T		S	B		T	T			B
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions