 |
Job Description | P06864 | Confidence | 29.63% | Date | Thu Jan 5 10:59:27 GMT 2012 |
Rank | 258 | Aligned Residues | 71 |
% Identity | 11% | Template | c3t4cD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1; |
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria
|
Resolution | 1.95 Å |
|
 |
  |   |
319 | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | I | K | V | R | D | G | L | F | W | I | N | N | R | Y | V | M | L | H | G | V | N | R | H | D | N | D | H | R | K | G | R | A | V | G | M | D | R | V | E | K | D | L | Q | L | M | K | Q | H | N | I | N | S | V | R | T | . |
. |
. |
. |
. |
A | H | Y | P | N | D | P | R | F | Y | E | L | C | D | I | Y | G | L | F |
Query Conservation |   |
  |
|
|   |   |   |   |   |
|   |
|
|
|
|   |
|   |
|
|
|
|
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |
|
|
|   |   |
|   |
|   |
|
|   | . | . | . | . | . |
|
|
|
|   |   |   |   |
|
|
|
|
|
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |   |   |
|
|   |   |   |
|   |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |   |   |
|
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |
|
|   |
Template Sequence |   |
S | M | K | L | Y | D | F | E | V | G | L | D | Q | P | F | F | L | I | A | G | T | C | . |
. |
. |
. |
. |
. |
. |
. |
. |
V | V | E | S | E | Q | M | T | I | D | T | A | G | R | L | K | E | I | C | A | K | L | N | V | P | F | I | Y | K | S | S | M | D | E | G | L | R | I | L | G | E | V | K | R | Q | L | G | L | P |
Template Known Secondary structure |   |
|  |  |  | T | T |  |  |  | S | T | T | S |
|
|  |  |  |  |  |  | S | . | . | . | . | . | . | . | . | . | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
Template Predicted Secondary structure |   |
|  |  |  |
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
0 | . | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
  |
  |   |
394 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
V | M | A | E | T |
Query Conservation |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |
Template Sequence |   |
V | L | T | D | V |
Template Known Secondary structure |   |
 |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
  |   |
87 | . | . | 90 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|