Return to main results Retrieve Phyre Job Id

Job DescriptionP06864
Confidence100.00%DateThu Jan 5 10:59:27 GMT 2012
Rank4Aligned Residues959
% Identity36%Templatec3obaA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60........ .70.........
Predicted Secondary structure 
















































..






Query SS confidence 


































































. .










Query Sequence  NRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVPEAFTSELM. . ADWGHITVPAM
Query Conservation    



 
   

    
   
      
       
    



 
 
            
     ..  
  
 

  
Alig confidence 





















..............






























..










Template Conservation     


 
   
  
 

    ..............     



 
 
                      
  
 

  
Template Sequence  ENLRNPKKVHENRLPTRAYYYD. . . . . . . . . . . . . . QDIFESLNGPWAFALFDAPLDAPDAKNLDWETAKKWSTISVPSH
Template Known Secondary structure  GGGS
TT

SB








..............TTT

SSGGGS

TTS

TTS
S

Template Predicted Secondary structure 

















..............































Template SS confidence 















































































   7..10.........20........ .30.........40.........50.........60.........70..
 
   80... ......90.........100.........110.........120 .........130.........140.........150.....
Predicted Secondary structure 

...



























.














Query SS confidence 



. . .




































.


































Query Sequence  WQME. . . GHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLS. DGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSR
Query Conservation 
   ...
   
 
 
   
     
 
   
  
 


 
 

.    



 
 



   
 




  

   
  
Alig confidence 



...




































.


































Template Conservation 
      
   
 
 
  

     
     
  
 


 
 

     



 
 



 
 
 




  

   
  
Template Sequence  WELQEDWKYGKPIYTNVQYPIPIDIPNPPTVNPTGVYARTFELDSKSIESFEHRLRFEGVDNCYELYVNGQYVGFNKGSR
Template Known Secondary structure  TTSSGGGTT


SSS
SS

BTTB

SS


S
STT
TT
Template Predicted Secondary structure 








































Template SS confidence 















































































   73......80.........90.........100.........110.........120.........130.........140.........150..
 
   156...160.........170.........180.........190.........200....... ..210.........220 .........230...
Predicted Secondary structure 






























.
.



Query SS confidence 



















































.












.












Query Sequence  LTAEFDISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKH. LTHINDFTVRTDF. DEAYCDATLSCEV
Query Conservation     




  

 


 
 
 
    
 
  
 

 
  


 
 
 
   
.   
 
  
 
 
.      
 
 
 
Alig confidence 



















































.












.












Template Conservation   
 




  
  


 


 
   



  



    


 


 
   
    
 
  
 
 
 
       
 
 
Template Sequence  NGAEFDIQKYVSEGENLVVVKVFKWSDSTYIEDQDQWWLSGIYRDVSLLKLPKKAHIEDVRVTTTFVDSQYQDAELSVKV
Template Known Secondary structure  S

TTT

SS

GGGGGB

S


S
SSSSTT

S
Template Predicted Secondary structure 
































Template SS confidence 















































































   153......160.........170.........180.........190.........200.........210.........220.........230..
 
   234.....240........ .250.........260.........270.........280.........290.........
Predicted Secondary structure 




..............



















Query SS confidence 














. . . . . . . . . . . . . .


















































Query Sequence  VLENLAASPVVTTLE. . . . . . . . . . . . . . YTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMT
Query Conservation   
 
         
 ..............  
 
                          
  
 


 
 
 

 
   
Alig confidence 














..............


















































Template Conservation   
           
               
    
                         
  
 




 
 

 
 
 
Template Sequence  DVQGSSYDHINFTLYEPEDGSKVYDASSLLNEENGNTTFSTKEFISFSTKKNEETAFKINVKAPEHWTAENPTLYKYQLD
Template Known Secondary structure  S




B
TT
B





SS







TTS
SSS

BB
SSSB
B
Template Predicted Secondary structure 
































Template SS confidence 















































































   233......240.........250.........260.........270.........280.........290.........300.........310..
 
   300.........310.........320.........330.........340.........350.........360.........370.........
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  LKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPN
Query Conservation 
    
 
 
      


 

     
 



 
 




 
   
  
     
    

 


  
 
 

 



 
Alig confidence 















































































Template Conservation 
    
 
 
      


 


    
 





 






   
  
     
    

 


  
 



 



 
Template Sequence  LIGSDGSVIQSIKHHVGFRQVELKDGNITVNGKDILFRGVNRHDHHPRFGRAVPLDFVVRDLILMKKFNINAVRNSHYPN
Template Known Secondary structure 
TTS

B

TTTT





BTTTBT


TT


TTS

Template Predicted Secondary structure 



























Template SS confidence 















































































   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   380.........390.........400...... ...410.........420.........430.........
Predicted Secondary structure 












....................














Query SS confidence 


























. . . . . . . . . . . . . . . . . . . .
































Query Sequence  DPRFYELCDIYGLFVMAETDVESHGFA. . . . . . . . . . . . . . . . . . . . NVGDISRITDDPQWEKVYVERIVRHIHAQKNHP
Query Conservation     






 

 
 


  
 

  ....................           
            

 





Alig confidence 


























....................
































Template Conservation     






 

 
 


  
 

                                 
 
      
   

 





Template Sequence  HPKVYDLFDKLGFWVIDEADLETHGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYLDRASQLVLRDVNHP
Template Known Secondary structure 
TTT

S
B
GGGGTT




TTTTTTTGGGTTT
GGGTT
T
Template Predicted Secondary structure 















































Template SS confidence 















































































   393......400.........410.........420.........430.........440.........450.........460.........470..
 
   440.........450.........460.........470.........480.........490.........500..... ....510...
Predicted Secondary structure 































......
Query SS confidence 

































































. . . . . .







Query Sequence  SIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHP. . . . . . KPRIICEY
Query Conservation 


 







 
          
 






 

        

 
  
               ......

 
  

Alig confidence 

































































......







Template Conservation 


 







 
          
  





 


       

 
 

                     

 
  

Template Sequence  SIIIWSLGNEACYGRNHKAMYKLIKQLDPTRLVHYEGDLNALSADIFSFMYPTFEIMERWRKNHTDENGKFEKPLILCEY
Template Known Secondary structure  T

BS




TTS
TT
TT
TT
SSS

B
TTS
BSS
Template Predicted Secondary structure 






































Template SS confidence 















































































   473......480.........490.........500.........510.........520.........530.........540.........550..
 
   514.....520.........530.........540.........550........ .560.........570.........580........
Predicted Secondary structure 



















.....





















Query SS confidence 












































. . . . .





























Query Sequence  AHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGN. . . . . VWYKFGGDYGDYPNNYNFCLDGLIYSDQTP
Query Conservation   





 
 
  

      
   




   
         
 .....    




 
   
  
   


  

 
Alig confidence 












































.....





























Template Conservation   




  
 
  

          






 

                   






 
 
  
   


  

 
Template Sequence  GHAMGNGPGSLKEYQELFYKEKFYQGGFIWEWANHGIEFEDVSTADGKLHKAYAYGGDFKEEVHDGVFIMDGLCNSEHNP
Template Known Secondary structure  S


SS




TTS
SB



TTTSS
TTTT

SS

GGGG


SB
TTS
B
Template Predicted Secondary structure 






















































Template SS confidence 















































































   553......560.........570.........580.........590.........600.........610.........620.........630..
 
   589590.........600.........610.........620.........630.........640.........650.........660........
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  GPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDA
Query Conservation 

   
 
   


           
 
 
   
  
    
 
 
  

  
  
      
 
     
 
  
    
Alig confidence 



















...
















..













.....













.....
Template Conservation   
   
 
    

      ...    
 
   
  
   ..       
  
   .....   
  
  

   .....
Template Sequence  TPGLVEYKKVIEPVHIKIAH. . . GSVTITNKHDFITTDHL. . LFIDKDTGKTIDVP. . . . . SLKPEESVTIPSDT. . . . .
Template Known Secondary structure 
T
ST...T

SS

STT..TTT




.....


TT



.....
Template Predicted Secondary structure 



...


..




.....








.....
Template SS confidence 















































































   633......640.........650.. .......660......... 670.........680... ......690.......
 
   669670.........680.........690.........700.........710.........720.........730.........740........
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  REAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSGKPTSWQ
Query Conservation   
  
            
  
  

  
  
                          
 
        

   
 
    
Alig confidence  ....































..









































Template Conservation  ....      
         
  

  
  
     ..                     
        
    
 
    
Template Sequence  . . . . TYVVAVLKDDAGVLKAGHEIAWGQAELPLKVP. . DFVTETAEKAAKINDGKRYVSVESSGLHFILDKLLGKIESLK
Template Known Secondary structure  ....SSS
BBTB
TT








..





S




SSTTTTTT
Template Predicted Secondary structure  ....















..


















Template SS confidence 















































































   698.700.........710.........720......... 730.........740.........750.........760.........770.
 
   749750...... ...760.........770.........780.........790.........800.. .......810.........820....
Predicted Secondary structure 



..




















..





Query SS confidence 







. .













































. .





















Query Sequence  VNGESLLT. . REPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQSDGE. . VLIISRTVIAPPVFDFGMRCTY
Query Conservation    
  

 ..       







       
                       ..  
                   
Alig confidence 







..













































..





















Template Conservation    
  

          


 



       
   
                                           
Template Sequence  VKGKEISSKFEGSSITFWRPPTNNDEPRDFKNWKKYNIDLMKQNIHGVSVEKGSNGSLAVVTVNSRISPVVFYYGFETVQ
Template Known Secondary structure  TT

SS
S





TTTTTTTTGGG

SS
STT
S
Template Predicted Secondary structure 


































Template SS confidence 















































































   772.......780.........790.........800.........810.........820.........830.........840.........850.
 
   825....830.........840..... ....850.........860.........870.........880.........890.........900...
Predicted Secondary structure 






.





























Query SS confidence 




















.

























































Query Sequence  IWRIAADGQVNVALSGERYGD. YPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFP
Query Conservation   
 
   
 
 
         .    


 
    

       
 



 
 
 

      
 
   
      
  
Alig confidence 







.











.



















































.




Template Conservation   
 
   
.  
              


 
    
      
 
 
 

 
 
 

      
 
   
    . 
  
Template Sequence  KYTIFANK. INLNTSMKLTGEYQPPDFPRVGYEFWLGDSYESFEWLGRGPGESYPDKKESQRFGLYDSKDVEEF. VYDYP
Template Known Secondary structure 
SS.SSS

SB
S
TT
SS

BTTB
TTS
GGG



.

SS
Template Predicted Secondary structure 


.

























.


Template SS confidence 















































































   852....... 860.........870.........880.........890.........900.........910.........920.... .....
 
   904.....910.........920.........930.........940.........950.........960.........970.........980...
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  QNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLGSNSWGSEVLDS
Query Conservation 

 


 



  
    
 

 
       


  
    
  
 
  

       
 

    


  
 

     
Alig confidence 



























.


















































Template Conservation 

 


 



  
              .  
         
  
 
  

       
 

    


  
 
      
Template Sequence  QENGNHTDTHFLNIKFEGAGKLSIFQKE. KPFNFKISDEYGVDEAAHACDVKRYGRHYLRLDHAIHGVGSEACGPAVLDQ
Template Known Secondary structure 
S


STTTSS.S

TTT
SSGGG





GGGS



GG
Template Predicted Secondary structure 















.


























Template SS confidence 















































































   930.........940.........950....... ..960.........970.........980.........990.........1000........
 
   984.....990........
Predicted Secondary structure 



Query SS confidence 














Query Sequence  WRVWFRDFSYGFTLL
Query Conservation 
 
    
   
 
 
Alig confidence 














Template Conservation 
 
        
 
 
Template Sequence  YRLKAQDFNFEFDLA
Template Known Secondary structure  GS
BS

Template Predicted Secondary structure 



Template SS confidence 














   10091010.........1020...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions