Job Description P06864 Confidence 29.91% Date Thu Jan 5 10:59:27 GMT 2012 Rank 254 Aligned Residues 188 % Identity 12% Template c3bs6B_ PDB info PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.									750	.	.	.	.		.	.	.	.	.	760	.	.	.	.	.	.	.				.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.						.														.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.						.														.	.	.
Query Sequence		D	R	L	S	C	T	V	R	G	Y	N	F	A	I	T	F	S	K	M	S	G	K	P	T	S	W	Q	V	.	.	.	.	.	.	.	.	N	G	E	S	L	.	L	T	R	E	P	K	I	N	F	F	K	P	M	.	.	.	I	D	N	H	K	Q	E	Y	E	G	L	W	Q	P	N	H	L	Q	I	M	Q	E
Query Conservation																														.	.	.	.	.	.	.	.						.														.	.	.
Alig confidence																														.	.	.	.	.	.	.	.						.														.	.	.																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	Q	A	Q	S	G	L	T	G	R	D	G	P	D	N	P	A	N	G	P	R	P	L	Y	N	V	.	.	.
Template Known Secondary structure											S	S							T	B	T	T												S	S	T	T			S					S				T	T											S	T	T		T	T	S	G	G	G	S	S			B		B		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.		.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		H	L	R	D	F	A	V	E	Q	S	D	G	E	V	L	I	I	S	R	T	V	I	A	P	P	V	F	D	F	G	M	R	C	T	Y	I	W	R	I	A	A	D	G	.	Q	V	N	V	A	L	S	G	E	R	Y	G	D	Y	P	H	I	I	P	C	I	G	F	T	M	G	I	N	G	E	Y	D	Q	V	A	Y
Query Conservation																																													.
Alig confidence																						.	.	.	.	.																			.
Template Conservation																						.	.	.	.	.
Template Sequence		E	K	D	A	Y	V	L	A	E	G	Q	N	E	L	Q	V	P	X	T	Y	.	.	.	.	.	T	D	A	A	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V	Q	N	A	G	E	K	P	L	E	I	S	S	F	G	Q	L	K	Q	S	I	T	L	F	R	G	A	A	Y
Template Known Secondary structure		S		S						T	T		S									.	.	.	.	.			T	T												T	T														S	S	S														S
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		869	870		.	.	.	.	.			.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.
Predicted Secondary structure				.						.	.
Query SS confidence				.						.	.
Query Sequence		Y	G	.	R	G	P	G	E	.	.	N	Y	A	D	S	Q	Q	A	N	I	I	D	I	W	R	S	T	V	D	A	M	F	E	N	Y	P	F	P	Q	N	N	G	N	R	Q	H	V	R	W	T	A	L	T	N	R	H	G	N	G	L	L	V	V	P	Q	R	P	I	N	F	S	A	W
Query Conservation				.						.	.
Alig confidence				.						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		S	T	P	D	E	K	Y	E	K	Y	K	F	D	T	I	A	D	N	E	N	L	N	I	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	G	W	V	A	X	L	Q	Q	Y	.	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y
Template Known Secondary structure				T	T	T												T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								T	T	.										S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																					.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions