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Job DescriptionP06864
Confidence100.00%DateThu Jan 5 10:59:27 GMT 2012
Rank3Aligned Residues977
% Identity32%Templatec3bgaB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20......... 30.........40.........50.........60.........70 .......
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Query Sequence  MNRWENIQLTHENRLAPRAYFFSYDSVAQ. ARTFARETSSLFLPLSGQWNFHFFDHPLQVPEAFTSELMAD. . WGHITVP
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Template Sequence  LPEWQSQYAVGLNKLAPHTYVWPYADASDIGKPGGYEQSPYYXSLNGKWKFNWVKNPDNRPKDFYQPSYYTGGWADINVP
Template Known Secondary structure 

GGG
SS

BSS









BS
GGGTTSTTGGGGSTT

SGGGS
GGGGSTTS

TTSS
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   27..30.........40.........50.........60.........70.........80.........90.........100......
 
   78.80.........90....... ..100..... ....110.........120.........130.........140.........
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Query Sequence  AMWQMEGHGKLQYTDEGFPF. . . . . . . PIDVPFVP. SDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVG
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Template Sequence  GNWERQGYGTAIYVNETYEFDDKXFNFKKNPPLVPFAENEVGSYRRTFKVPADWKGRRVVLCCEGVISFYYVWVNGKLLG
Template Known Secondary structure  S
GGGGT
S

SSS
TTSSGGGT


BTTB

STT


GGGTTSS
STT
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   107..110.........120.........130.........140.........150.........160.........170.........180......
 
   150.........160.........170.........180.........190.........200.........210.........220. .......
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Query Sequence  FSKGSRLTAEFDISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFD. EAYCDAT
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Template Sequence  YNQGSKTAAEWDITDVLSEGENVVALEVYRWSSGAYLECQDXWRLSGIERDVYLYSTPKQYIADYKVSASLDKEKYKEGI
Template Known Secondary structure 
SSS

GGG

SSS

GGGGGB

S


S

SS
TTTS
S
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   187..190.........200.........210.........220.........230.........240.........250.........260......
 
   229230.........240.........250.........260.........270.........280.........290.........300........
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Query Sequence  LSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTLKDANGNVL
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Template Sequence  FNLEVTVEGPSATASSIAYTLKDASGKAVLQDAINIKSRGLSNFIAFDEKKIAEVKAWNAEHPNLYTLVLELKDAQGKVT
Template Known Secondary structure  S

SS

TTS


SSS


TT

BB
SSSB


TTS
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   267..270.........280.........290.........300.........310.........320.........330.........340......
 
   309310.........320.........330.........340.........350.........360.........370.........380........
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Query Sequence  EVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCD
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Template Sequence  ELTGCEVGFRTSEIKDGRFCINGVPVLVKGTNRHE. HSQLGRTVSKELXEQDIRLXKQHNINXVRNSHYPTHPYWYQLCD
Template Known Secondary structure 
B

TTTT




.
BTTBS


TT


TTS


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   347..350.........360.........370.........380. ........390.........400.........410.........420.....
 
   389390.........400.........410.........420.........430.........440.........450.........460........
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Query Sequence  IYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDD
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Template Sequence  RYGLYXIDEANIESHGXGY. . GPASLAKDSTWLTAHXDRTHRXYERSKNHPAIVIWSQGNEAGNGINFERTYDWLKSVEK
Template Known Secondary structure  T

S
B
GGG
S..STT
TTT
GGGTT
TT

SSS

S
S
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   426...430.........440.... .....450.........460.........470.........480.........490.........500...
 
   469470.........480.........490.........500 .........510.........520.........530.........540.......
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Query Sequence  TRLVHYEEDRDAEVVDIISTMYTRVPLMNEFG. EYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCD
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Template Sequence  GRPVQYERAELNYNTDIYCRXYRSVDEIKAYVGKKDIYRPFILCEYLHAXGNSCGGXKEYWEVFENEPXAQGGCIWDWVD
Template Known Secondary structure  SS

GGGTTSSS
SSB

TT

TSTT

S
S


SS

TT
TTS
SB
Template Predicted Secondary structure 






































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   504.....510.........520.........530.........540.........550.........560.........570.........580...
 
   548.550.........560......... 570.........580.........590.........600.........610.........620.....
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Query Sequence  HGIQAQDDHGNVWYKFGGDYGD. . YPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTTL
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Template Sequence  QNFREIDKDGKWYWTYGGDYGPEGIPSFGNFCGNGLVNAVREPHPHLLEVKKIYQNIKATLSDRKNLKVCIKNWYDFSNL
Template Known Secondary structure 



TTS


TTSSSSTT

B
GGGG


SB
TT

B

STTTT

SS

G
Template Predicted Secondary structure 










































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   584.....590.........600.........610.........620.........630.........640.........650.........660...
 
   626...630.........640.........650.........660........ .670.........680.........690.........700...
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Query Sequence  DDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDA. . REAFLNITVTKDSRTRYSEAGHPIATYQFPLKENT
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Template Sequence  NEYILRWNVKGEDGTVLAEGTKEVDCEPHATVDVTLGAVKLPNTVREAYLNLSWSRKEATPLVDTDWEVAYDQFVLAGNK
Template Known Secondary structure  GGTT






TT







TT
SSS

SSS
TTS



T
Template Predicted Secondary structure 









































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   664.....670.........680.........690.........700.........710.........720.........730.........740...
 
   704.....710.........720.........730.........740.........750.........760.........770....... ..780.
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Query Sequence  AQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEG. . LWQP
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Template Sequence  NTTAYRP. . . . . . . . . . . . . . . . . QKAGETAFVVDKNTGALSSLTLDGKELLAAPITLSLFRPATDNDNRDRNGARLWRK
Template Known Secondary structure  T

TTS
.................


S

TTT

TT

S





TTTTT
TTS
Template Predicted Secondary structure 




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   744.....750 .........760.........770.........780.........790.........800......
 
   782.......790.........800.........810.........820.........830.........840.........850.........860.
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Query Sequence  NHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFTMGING
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Template Sequence  AGLNNLTQKVVSLKEEKT. . . . SATVRAEILNGKGQKVGXADFVYALDKNGALKVRTTFQPDTAIVKSXARLGLTFRXAD
Template Known Secondary structure  TTTTS

SS....
TTS

TTS

TTT
S

ST
Template Predicted Secondary structure 




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   807..810.........820.... .....830.........840.........850.........860.........870.........880..
 
   862.......870.........880.........890.........900.........910.........920.........930.........940.
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Query Sequence  EYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYT
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Template Sequence  AYNQVSYLGRGDHETYIDRNQSGRIGLYDTTVERXFHYYATPQSTANRTDVRWAKLTDQAGEGVFXESNRPFQFSIIPFS
Template Known Secondary structure  T

SS

BTTB
SSS



SS






TTS
SS
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   883......890.........900.........910.........920.........930.........940.........950.........960..
 
   942.......950.........960.........970.........980.........990.........1000.
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Query Sequence  QENIHAAQHCNELQRSDDITLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVS
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Template Conservation     
  
 
  

       
 

    


  



     
 
        
 
 
  
Template Sequence  DVLLEKAHHINELERDGXITIHLDAEQAGVGTATCGPGVLPQYLVPVKKQSFEFTLYPVK
Template Known Secondary structure 
SSGGG



S


TTTTSS

S
GGGS


S

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   963......970.........980.........990.........1000.........1010.........1020..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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