 |
Job Description | P06864 | Confidence | 87.22% | Date | Thu Jan 5 10:59:27 GMT 2012 |
Rank | 168 | Aligned Residues | 100 |
% Identity | 13% | Template | c2xvgA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:alpha xylosidase; |
PDBTitle: crystal structure of alpha-xylosidase (gh31) from2 cellvibrio japonicus
|
Resolution | 2.60 Å |
|
 |
  |   |
639 | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | T | L | A | T | Q | Q | I | K | L | R | D | V | A | P | N | S | E | A | P | L | Q | I | T | L | P | Q | L | D | A | R | E | A | F | L | N | I | T | V | T | K | D | S | R | T | R | Y | S | E | A | G | H | P | I | A | T | Y | Q | F | P | L | K | E | N | T | A | Q | P | V | P | F | A | P | N | N | A | R | P | L | T |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . | . |   |   |   |
|   |
|
|   |   |   |
|   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | V | E | R | T | A | E | G | V | V | L | T | L | P | E | G | T | V | K | K | L | R | L | Q | V | M | . |
. |
. |
. |
G | E | R | I | I | R | V | T | A | L | P | G | T | D | F | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | V | P | E | S | I | Q | V | V | A | K | P | A | T | N | V | P | F | S |
Template Known Secondary structure |   |
 |  |  |  |
| S | S |  |  |  |  |  |
| S | S | S | S |
|
|  |  |  |  |  |  |  | . | . | . | . |  | T | T |  |  |  |  |  |  |  | S | S | S |
| G | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | S |
|
|
| S | S |
|
|
|
|
|
| S | S |
|
|
|  |
Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
48 | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
  |   |
719 | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | D | D | R | L | S | C | T | V | R | G | Y | N | F | A | I | T | F | S | K | M | S | G | K | P | T | S | W | Q | V | N | G | E | S | L | L | T | R |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|
Template Sequence |   |
V | D | Q | A | G | E | K | L | V | L | K | T | S | Q | V | S | A | E | V | S | L | L | D | G | T | V | S | F | R | D | A | K | G | N | V | L | L | Q | E |
Template Known Secondary structure |   |
 |  |  |  | T | T |  |  |  |  |  |
| S | S |
|  |  |  |  |  | T | T | T |
|
|  |  |  |  |
| T | T | S |
|  |  |  |  | B |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|