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Job DescriptionP06864
Confidence97.41%DateThu Jan 5 10:59:27 GMT 2012
Rank124Aligned Residues340
% Identity19%Templatec2vrqB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:alpha-l-arabinofuranosidase; PDBTitle: structure of an inactive mutant of arabinofuranosidase from2 thermobacillus xylanilyticus in complex with a3 pentasaccharide
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.... .....380 .........390.........400...
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Query Sequence  EKDLQLMKQHNINSVRT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . AHYPND. . . . . PRFYELCDIYGLFVMAETDVESH
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Template Sequence  NDVLEALKQMKIPVLRWPGGCFADEYHWKDGVGPREKRKRMVNTHWGGVIENNHFGTHEFMMLCELLGCEPYISGNV. . .
Template Known Secondary structure  T

S
SGGGGT

GGGGSSSGGG


TTTTT


S
T


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   54.....60.........70.........80.........90.........100.........110.........120.........130
 
   404.....410.........420.........430 ......... 440.........450. ........460...
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Query Sequence  GFANVGDISRITDDPQWEKVYVERIVR. . . . . . . HIHAQKNHP. . . SIIIWSLGNESG. . . . . . . . . . YGCNIRAMYHAA
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Template Sequence  . . . . . . . . . . GSGTVQEMSEWVEYITFDGESPMANWRRENGREKPWRIKYWGVGNQNWGCGGNMRAEYYADLYRQFQTYL
Template Known Secondary structure  ..........SS



S

TT

S





S
TTTTTT


T
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   131........140.........150.........160.........170.........180.........190.........200
 
   464.. ...470.........480. ........490. ...
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Query Sequence  KAL. DDTRLVHYEEDRDAE. . . . . . . . . . . . . VVDIISTMYT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RVP
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Template Sequence  RNYGDNKLHKIACGANTADYHWTEVLMKQAAPFMHGLSLHYYTVPGPWEKKGPATGFTTDEWWVTLKKALFMDRLVTKHS
Template Known Secondary structure 


TT


TT
GGG
S
SS
TTS


SSS

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   201........210.........220.........230.........240.........250.........260.........270.........280
 
   495....500.........510.........520.........530.........540.........550.........560.........570....
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Query Sequence  LMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNY
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Template Sequence  AIMDVYDPDKRIDLIVDEWGTWYDVEPGTNP. . . . GFLYQQNSIRDALVAGATLHIFHRHCDRVRMANIAQLVNVLQSVI
Template Known Secondary structure 
TT

S



STTS
G....GG




BTTTT
SBSSSS
S
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   281........290.........300.........310. ........320.........330.........340.........350......
 
   575....580.........590.........600.........610.........620.........630.........640.........650....
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Query Sequence  NFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPN
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Template Sequence  LTEGERM. . . . . LLTPTYHVFNMFKVHQDAELLD. . . TWESVERTGPEGELPKVSVSASRAADGKIHI. . . . SLCNLDFE
Template Known Secondary structure  TT.....
GGGGTT
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SGGG
S
TTS
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SS
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   357..360... ......370.........380..... ....390.........400.........410...... ...420....
 
   655....660.........670.........680.........690.........700.........710.........720.........730....
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Query Sequence  SEAPLQITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFA
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Template Sequence  TGASVDIELRGLNGGVSATGTTLT. . . . . . . . . . . . . . . . . . . . . . . . SGRIDGHNTFDEPERVKPAPFRDFKLEGGHLN
Template Known Secondary structure  S
S
SS
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SSTT
B

SSSTTSS



TT
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   425....430.........440........ .450.........460.........470.........480
 
   735....740.........750
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Query Sequence  ITFSKMSGKPTSWQVN
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Template Sequence  ASLPPMSVTVLELTAG
Template Known Secondary structure 
SS
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   481........490......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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