Job Description P06864 Confidence 99.61% Date Thu Jan 5 10:59:27 GMT 2012 Rank 54 Aligned Residues 208 % Identity 17% Template c2oylB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:endoglycoceramidase ii; PDBTitle: endo-glycoceramidase ii from rhodococcus sp.: cellobiose-like2 imidazole complex Resolution 1.80 Å

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		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.						.	.	.	.	.	380												.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	R	Y	V	M	L	H	G	V	N	R	H	D	N	D	H	R	K	G	R	A	V	G	M	D	R	V	E	K	D	L	Q	L	M	K	Q	H	N	I	N	S	V	R	T	.	.	.	.	.	A	H	Y	P	N	D	.	.	.	.	.	.	.	.	.	.	.	P	R	F	Y	E	L	C	D	I	Y	G	L	F
Query Conservation																																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	R	S	L	I	L	R	G	F	N	T	A	S	S	A	K	S	A	P	D	G	M	P	Q	F	T	E	A	D	L	A	R	E	Y	A	D	M	G	T	N	F	V	R	F	L	I	S	W	R	S	V	E	P	A	P	G	V	Y	D	Q	Q	Y	L	D	R	V	E	D	R	V	G	W	Y	A	E	R	G	Y	K
Template Known Secondary structure		T													G	G	G	T	T		T	T	S			S																													S	B	T	T	B																			T	T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.																																																	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	A	E	T	D	V	E	S	H	G	F	A	N	V	G	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	I	T	D	D	P	Q	W	E	K	V	Y	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.
Template Sequence		V	M	L	D	M	.	.	.	.	.	.	H	Q	D	V	Y	S	G	A	I	T	P	G	A	G	A	I	G	N	G	A	P	A	W	A	T	Y	M	D	G	L	P	V	E	P	Q	P	R	W	E	L	Y	Y	I	Q	P	G	V	M	R	A	F	D	N	F	W	N	T	T	G	K	H	P	E	L	V	E	H	Y	A
Template Known Secondary structure							.	.	.	.	.	.			B	S	S		G	G	G						S	S	S	B	S	S		G	G	G				T	T							S	S	G	G	G	G	G	G	S											T	T	S	S	S	S		T
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.														.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query Sequence		E	R	I	V	R	H	I	H	A	Q	K	N	H	P	S	I	I	I	W	S	L	G	N	E	S	G	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	C	N	I	R	A	M	Y	H	A	A	K	A	L	D	D	T	R	L	V	H	Y	E	E	D	R	D	A	E	V	V	D	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	W	R	A	V	A	D	R	F	A	D	N	D	A	V	V	A	Y	D	L	M	N	E	P	F	G	G	S	L	Q	G	P	A	F	E	A	G	P	L	A	A	M	Y	Q	R	T	T	D	A	I	R	Q	V	D	Q	D	T	W	V	C	V	A	P	Q	A	I	G	V	N	Q	G	L	P	S	G	L	T	K	I
Template Known Secondary structure												T	T		T	T								S	S				T	T			T					T	T														T	T	T		S	S	S								S	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
												485	.	.	.	.	490	.	.																					.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.			.	.	.	.	.	.	530	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	I	I	S	T	M	Y	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	L	M	N	E	F	G	E	Y	P	H	P	K	P	R	I	I	C	E	Y	A	H	A	M	G	N	G	P	G	G	.	.	L	T	E	Y	Q	N	V	F	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		D	D	P	R	A	G	Q	Q	R	I	A	Y	C	P	H	L	Y	P	L	P	L	D	H	E	G	L	A	R	T	L	T	D	V	T	I	D	A	W	R	A	N	T	A	H	T	A	R	V	L	G	D	V	P	I	I	L	G	E	F	G	L	D	T	T	L	P	G	A	R	D	Y	I	E	R	V	Y	G	T	A	R
Template Known Secondary structure					S	S	S	S								B				G	G	G																												T	T	S			B				B					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		533	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	D	C	I	Q	G	H	Y	V	W	E	W
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		E	M	.	.	G	A	G	V	S	Y	W	S	S
Template Known Secondary structure				.	.	T						S
Template Predicted Secondary structure				.	.
Template SS confidence
		374	.			.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions