Job Description P06864 Confidence 98.58% Date Thu Jan 5 10:59:27 GMT 2012 Rank 103 Aligned Residues 241 % Identity 17% Template c2depA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:thermostable celloxylanase; PDBTitle: crystal structure of xylanase b from clostridium2 stercorarium f9 Resolution 1.80 Å

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		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.																.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query Sequence		L	H	G	V	N	R	H	D	N	D	H	R	K	G	R	A	V	G	M	D	R	V	E	K	D	L	Q	L	M	K	Q	H	N	I	N	S	V	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	Y	P	N	D	P	R	F	Y	E	L	C	D	I	Y	G	L	F	V	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Alig confidence												.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		L	A	E	A	F	R	D	Y	F	P	.	.	I	G	A	A	I	E	P	G	Y	T	T	G	Q	I	A	E	L	Y	K	K	H	V	N	M	L	V	A	E	N	A	M	K	P	A	S	L	Q	P	T	E	G	N	F	Q	W	A	D	A	D	R	I	V	Q	F	A	K	E	N	G	M	E	L	R	F	H	T	L	V
Template Known Secondary structure						T	T	T	T			.	.							G	G	G	S	S												S					S	S	T	T	S						S	B	T	T	B																T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
										395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	M	A	E	T	D	V	E	S	H	G	F	A	N	V	G	D	I	S	R	I	T	D	D	P	Q	W	E	K	V	Y	V	E	R	I	V	R	H	I	H	A	Q	K	N	H	P	S	I	I	I	W	S	L	G	N	E	S	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																													.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.
Template Sequence		W	H	N	Q	T	P	D	W	F	F	L	D	K	E	G	K	P	M	V	E	E	T	D	P	Q	K	R	E	E	N	R	K	L	L	L	Q	R	L	E	N	Y	I	R	A	V	V	L	R	Y	K	D	D	.	.	I	K	S	W	D	V	V	N	E	V	I	E	P	N	D	P	G	G	M	R	N	S	P	W	Y	Q
Template Known Secondary structure			S	S	S			G	G	G	G	B		T	T	S	S	B	G	G	G																														T	T	T	.	.											B		T	T	S	G	G	G	B
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
					453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.																					.	.	.	.	.	.	.	.	490	.							.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.												.
Query SS confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.												.
Query Sequence		.	.	.	G	C	N	I	R	A	M	Y	H	A	A	K	A	L	D	D	T	R	L	V	H	Y	E	E	D	R	D	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	I	I	S	T	M	Y	T	.	.	.	.	.	.	R	V	P	L	M	N	E	F	G	E	Y	.
Query Conservation		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.												.
Alig confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.												.
Template Conservation
Template Sequence		I	T	G	T	E	Y	I	E	V	A	F	R	A	T	R	E	A	G	G	S	D	I	K	L	Y	I	N	D	Y	N	T	D	D	P	V	K	R	D	I	L	Y	E	L	V	K	N	L	L	E	K	G	V	P	I	D	G	V	G	H	Q	T	H	I	D	I	Y	N	P	P	V	E	R	I	I	E	S	I	K	K	F
Template Known Secondary structure				T	T																S	S	S							S		T	T	S																	T	T														S	S		S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
			503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.																			.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		.	P	H	P	K	P	R	I	I	C	E	Y	A	H	A	M	G	N	G	P	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	E	Y	Q	N	V	F	Y	K	H	.	D	C	I	Q	G	H	Y	V	W	E	W	C	D	H	G	I	Q	A	Q	D	D	H	G	N	V	W	Y	K
Query Conservation		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																					.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		A	G	L	G	L	D	N	I	I	T	E	L	D	M	S	I	Y	S	W	N	D	R	S	D	Y	G	D	S	I	P	D	Y	I	L	T	L	Q	A	K	R	Y	Q	E	L	F	D	A	L	K	E	N	K	D	I	V	S	A	V	V	F	W	G	I	S	D	K	Y	S	W	L	N	G	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	T												S	S		T	T							S																							T	T	G	G	G							S		S	B	T	T	S		G	G	G	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	G	D	Y	G	D	Y	P	N	N	Y	N	F	C	L	D	G	L	I	Y	S	D	Q	T	P	G	P	G	L	K	E	Y	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	F	P	V	K	R	T	N	A	P	L	L	F	D	R	N	F	M	P	K	P	A	F	W	A	I	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S	S	S	S					S	S	B		T	T	S		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions