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Job DescriptionP06864
Confidence100.00%DateThu Jan 5 10:59:27 GMT 2012
Rank5Aligned Residues947
% Identity33%Templatec1yq2C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50...... ...60........
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Query Sequence  MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHP. . . . . . . . . . . . LQVPEAFTSELM
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Template Sequence  VSYLTDQGPGSGRRVPARSWLHS. . . . . . . . . . . . . . DAPALSLNGDWRFRLLPAAPGTAGAGSVLPSGETVEGVAAESY
Template Known Secondary structure 
GGGT

SS
SB






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S


SS
TTSGGGTT
S
TT

TTGGGSTT
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   6...10.........20........ .30.........40.........50.........60.........70.
 
   6970 .........80.. .......90.........100.........110.........120... ......130.........140
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Query Sequence  AD. . WGHITVPAMWQM. . . EGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLSDGW. . . QGKQTLIKFDGVETYFE
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Template Conservation 
   
  
 

  
      

  
 
 
  

    

 

  
  
 


 
 

  
    



 
 



     
Template Sequence  DDAAWDTLPVPSHWVMGQDGKYGRPIYTNVQYPFPIDPPHVPDANPTGDFRRRFDVPAQWFESTTAALTLRFDGVESRYK
Template Known Secondary structure 

TT
SS
TTSSSTTTT


SSS
SS
S
TT


S



GGGGSTTS
S
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   72.......80.........90.........100.........110.........120.........130.........140.........150.
 
   141........150.........160.........170.........180.........190.........200.........210.........220
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Query Sequence  VYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDF
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Template Sequence  VWVNGQEIGVGSGSRLAQEFDVSDALRAGSNLLVVRVHQWSAASYLEDQDQWWLPGIFRDVTLQARPAGGITDAWLRTGW
Template Known Secondary structure  TT
TTS

TTT

SSS
GGGGGB

S


S
TT
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   152.......160.........170.........180.........190.........200.........210.........220.........230.
 
   221........230.........240.........250.........260.........270.........280.........290.........300
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Query Sequence  DEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTL
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Template Sequence  SARSGAGTGTIDPEITA. . . DATAFPVTLSVPELGVNVTWK. . . . . . . . . SAEEVAPLALENVEPWSAEVPRLYEASVSS
Template Known Secondary structure 

STT
...
GGG
SGGGTS.........SGGG


SS


B
SSSB


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   232.......240........ .250.........260......... 270.........280.........290.........
 
   301........310.........320.........330.........340.........350.........360.........370.........380
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Query Sequence  KDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPND
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Template Sequence  AA. . . . . . ESISVRLGFRTVRIVGDQFLVNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLALMKRFNVNAIRTSHYPPH
Template Known Secondary structure  SS......




TTTT





TTTTT


TT

TTS


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   300. ........310.........320.........330.........340.........350.........360.........370...
 
   381........390.........400.........410.........420.........430.........440.........450.........460
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Query Sequence  PRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMY
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Template Sequence  PRLLDLADEMGFWVILECDLETHGFEAGGWVENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNESGTGSNLAAMA
Template Known Secondary structure  TT

S
B
GGGTTTTTTT
GGG
GGGTT
TT

SS



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   374.....380.........390.........400.........410.........420.........430.........440.........450...
 
   461........470.........480.........490.........500. ........510.........520....
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Query Sequence  HAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGE. . . . . . . . . . . . . . . . YPHPKPRIICEYAHAMGNGPGGL
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Template Sequence  AWAHARDSSRPVHYEGDYTGAYTDVYSRMYSSIPETDSIGRNDSHALLLGCDSAESARQRTKPFILCEYVHAMGNGPGAM
Template Known Secondary structure 
TTS

TT
TT
SS
SSS


SS




TT

TTS
S


SS



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   454.....460.........470.........480.........490.........500.........510.........520.........530...
 
   525....530.........540.........550.........560.........570.........580.........590.........600....
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Query Sequence  TEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKI
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Template Sequence  DQYEALVDKYPRLHGGFVWEWRDHGIRTRTAEGMEFFAYGGDFGEVVHDSNFVMDGMVLSDSTPTPGLYEFKQIVSPIRL
Template Known Secondary structure 
TTS
SB



TT


TTTT

SS

GGGG


SB
TTS
B
T
S
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   534.....540.........550.........560.........570.........580.........590.........600.........610...
 
   605....610... ......620.........630.........640.........650 .........660... ......670.......
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Query Sequence  HARDLTRGE. . LKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRD. . . . VAPNSEAPLQITL. PQLDAREAFLNITV
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Template Conservation             
 
 
   
  
      
 
  

  
  
            
     
 

        
  
 
  
Template Sequence  GLSLPAGGKPTLAVANLRHTADASDVVLRWRVEHDGAVAASGEVAAEGSDGPLRAGESATIALPAMPAAPLGETWLTVEA
Template Known Secondary structure 

TTS



SS

GGGTT
B
SSSB

TT







SSS
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   614.....620.........630.........640.........650.........660.........670.........680.........690...
 
   678.680.........690.........700.........710.........720.........730.........740.........750.......
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Query Sequence  TKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTR
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Template Sequence  VLRDATGWAPAGHPLGAVQLDLSAPA. . . . . VPTRSPRPATPLDGALPVSLGPATFD. . . . . . AGTLVSL. . AGQPV. . S
Template Known Secondary structure  SS

SSS
TT





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BSS


STT......TT..TT
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   694.....700.........710......... 720.........730.........740..... ....750.. ..... .
 
   758.760.........770...... ...780.........790.........800.........810.....
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Query Sequence  EPKINFFKPMIDNHKQEYE. . . . . . . . . . . . . . . . . . . . . . GLWQPNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPV
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Template Sequence  GPRLELWRAPTDNDRGAGFGAYGPGDPWLNSGRGVPAPSSEAVWKQAGLDRLTRRVEDVAALPDG. . . . IRVRTRYAAAD
Template Known Secondary structure 





TGGG

SS
BSTTS
TTSGGGT
B



TTGGGTT....TT
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   759760.........770.........780.........790.........800.........810.........820... ......830....
 
   816...820.........830.........840.........850.........860.........870.........880.........890.....
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Query Sequence  FDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDA
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Template Sequence  STHSVAVEENWQLD. GGELCLRIDITPSAGWNLVWPRIGVRWDLPTDVDGAAWFGAGPRESYPDSMHATMVARHAASLEE
Template Known Secondary structure 
S

.TT
TT

S

S
TTSS

BTTB
TT
Template Predicted Secondary structure 



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   835....840........ .850.........860.........870.........880.........890.........900.........910...
 
   896...900.........910.........920.........930 .........940.........950.........960.........970
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Query Sequence  MFENYPFPQNNGNRQHVRWTALTNRHGNGLLVVPQ. . . . . RPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLG
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Template Sequence  LNVPYARPQETGHRSDVRWLELDRAGAPWLRIDAEPDAAGRRPGFSLARHTAQEIAAAGHPHELPTPSHSYLYVDAAQHG
Template Known Secondary structure  S


SS

S


B
S
STT

TTS


SS

SSGGGS






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   914.....920.........930.........940.........950.........960.........970.........980.........990...
 
   971........980.........990.........
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Query Sequence  LGSNSWGSEVLDSWRVWFRDFSYGFTLLP
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Template Conservation 

  
 
      
 
        
 
 
Template Sequence  LGSRACGPDVWPDFALRPEARTLKLRISP
Template Known Secondary structure 


GGGS



GGG





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   994.....1000.........1010.........1020..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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