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Job DescriptionP06864
Confidence95.46%DateThu Jan 5 10:59:27 GMT 2012
Rank153Aligned Residues345
% Identity14%Templatec1qw9B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:alpha-l-arabinofuranosidase; PDBTitle: crystal structure of a family 51 alpha-l-2 arabinofuranosidase in complex with 4-nitrophenyl-ara
Resolution1.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.... .....380 .........390.........400....
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Query Sequence  EKDLQLMKQHNINSVRT. . . . . . . . . . . . . . . . . . . . . . . . . . . . AHYPND. . . . . PRFYELCDIYGLFVMAETDVESHG
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Template Sequence  QDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDLAWKSVETNEIGLNEFMDWAKMVGAEVNMAVNL. . . .
Template Known Secondary structure  T

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SGGGGG

GGGGSS
GGG


TTTT

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T


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   54.....60.........70.........80.........90.........100.........110.........120.........
 
   405....410.........420........ .430......... 440.........450. ........460..
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Query Sequence  FANVGDISRITDDPQWEKVYVERI. . . . . . . VRHIHAQKNHP. . . SIIIWSLGNESG. . . . . . . . . . . . YGCNIRAMYHA
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Template Sequence  . . . . . . . . . GTRGIDAARNLVEYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMDGPWQIGHKTAVEYGRIACEAAKV
Template Known Secondary structure  .........SS



SSSTT

S




S



STTSTT


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   130.........140.........150.........160.........170.........180.........190.........200
 
   463......470.........480 .........490 ........
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Query Sequence  AKALDDTRLVHYEEDRDA. . . . . . . . . . . . . . . . . EVVDIISTMY. . . . . . . . . . . . . . . . . . . . . . . . . . . TRVPLMNE
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Template Sequence  MKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYISLHQYYGNRDNDTANYLALSLEMDDFIRSVVAIADYVKA
Template Known Secondary structure 
TT



S
TTSTTTTGGG
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TT

TT
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   201........210.........220.........230.........240.........250.........260.........270.........280
 
   499500.........510.........520.........530....... ..540.........550.........560.........570....
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Query Sequence  FGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCI. . . . QGHYVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNY
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Template Sequence  KKRSKKTIHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVIAPIM
Template Known Secondary structure  T
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TTTT

TT
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TT



BTTTT
SBSSS
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   281........290.........300.........310.........320.........330.........340.........350.........360
 
   575....580.........590.........600.........610.........620.........630.........640.........650....
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Query Sequence  NFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPN
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Template Sequence  TEKNGPAW. . . KQTIYYPFMHASVYGRGVALHPVISSPKYDSK. . . DFTDVPYLESIAVYNEEKEEV. . . TIFAVNRDME
Template Known Secondary structure 
TTS
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S...S
SSSTTTT...

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   361....... .370.........380.........390.........400 .........410.........420. ........430.
 
   655....660.........670.........680.........690.........700.........710.........720.........730....
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Query Sequence  SEAPLQITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFA
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Template Sequence  DALLLECDVRSFEDYRVIEHIVLEHDNVKQT. . . . . . . . . . . . . . . . . . . . . . . . . NSAQSSPVVPHRNGDAQLSDRKVS
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TTSTT

S
TT
B.........................

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BS



TT
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   432.......440.........450.........460.. .......470.........480......
 
   735....740.........
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Query Sequence  ITFSKMSGKPTSWQV
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Template Sequence  ATLPKLSWNVIRLGK
Template Known Secondary structure 
SS
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   487..490.........500.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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