Job Description P06864 Confidence 47.76% Date Thu Jan 5 10:59:27 GMT 2012 Rank 211 Aligned Residues 113 % Identity 15% Template c1nkgA_ PDB info PDB header:lyase Chain: A: PDB Molecule:rhamnogalacturonase b; PDBTitle: rhamnogalacturonan lyase from aspergillus aculeatus Resolution 1.50 Å

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		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.				.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		P	L	T	L	E	D	D	R	L	S	C	T	V	R	G	Y	N	.	.	.	F	A	I	T	F	S	K	M	S	G	K	P	T	S	W	Q	V	N	G	E	S	L	L	T	R	E	P	K	I	N	F	F	K	P	M	I	D	N	H	K	Q	E	Y	E	G	L	W	Q	P	N	H	L	Q	I	M	Q	E	H	L	R
Query Conservation																			.	.	.
Alig confidence																			.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	G	I	T	T	S	S	S	A	Y	V	I	D	T	N	A	P	N	Q	L	K	F	T	V	S	R	S	S	C	D	I	T	S	I	I	H	Y	G	T	E	L	Q	Y	S	S	Q	G	S	H	I	G	S	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	A
Template Known Secondary structure									S	S									T	T								T	T	T									T	T				B		S	S	S		B			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																							.	.	.
		793	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	A	V	E	Q	S	D	G	E	V	L	I	I	S	R	T	V	I	A	P	P	V	F	D	F	G	M	R	C	T	Y	I	W	R	I	A	A	D	G	Q	V	N	V	A	L	S	G	E	R	Y	G	D	Y	P	H	I	I	P	C	I	G	F	T	M	G	I	N	G	E	Y
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Sequence		T	V	T	A	T	Q	S	G	D	Y	I	K	V	T	C	V	T	D	T	L	.	.	.	.	.	.	.	.	.	.	.	T	Q	Y	M	V	V	H	N	G	D	P	I	I	H	M	A	T	Y	I	T	A	E	P	S	.	.	I	G	E	L	R	F	I	A	R	L	N	S	D	L
Template Known Secondary structure									T	T									S	S		.	.	.	.	.	.	.	.	.	.	.								T	T											S	S			T	.	.	T	S										T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.												.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions