Job Description P63224 Confidence 99.85% Date Thu Jan 5 12:07:56 GMT 2012 Rank 12 Aligned Residues 162 % Identity 22% Template c3shoA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	L	I	R	N	E	L	N	E	A	A	E	T	L	A	N	F	L	K	D	D	A	N	I	H	A	I	Q	R	A	A	V	L	L	A	D	S	F	K	A	G	G	K	V	L	S	C	G	N	G	G	S	H	C	D	A	M	H	F	A	E	E	L	T	G	R	Y	R	E	N	R	P	G	Y	P	A	I	A	I
Query Conservation
Alig confidence																							.														.			.	.	.	.																									.	.	.	.	.	.
Template Conservation																							.														.			.	.	.	.																									.	.	.	.	.	.
Template Sequence		Q	Q	L	P	V	Q	V	F	T	N	D	I	E	N	L	N	Q	T	L	N	Q	.	T	Q	P	E	A	I	E	A	A	V	E	A	I	.	R	A	.	.	.	.	D	H	V	I	V	V	G	X	G	F	S	A	A	V	A	V	F	L	G	H	G	L	N	S	.	.	.	.	.	.	L	G	I	R	T	T	V	L
Template Known Secondary structure		G	G																			T	.														.			.	.	.	.	S								G	G	G														.	.	.	.	.	.	T	T
Template Predicted Secondary structure																							.														.			.	.	.	.																									.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.		.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	V	S	H	I	S	C	V	G	N	D	F	G	F	N	D	I	F	S	R	Y	V	E	A	V	G	R	E	G	D	V	L	L	G	I	S	T	S	G	N	S	A	N	V	I	K	A	I	A	A	A	R	E	K	G	M	K	V	I	T	L	T	G	K	D	G	G	K	M	A	G	T	A	D	I	E	I	R	V
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	G	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	I	T	L	A	N	L	R	P	T	D	L	X	I	G	V	S	V	W	R	Y	L	R	D	T	V	A	A	L	A	G	A	A	E	R	G	V	P	T	X	A	L	T	D	S	S	V	S	P	P	A	R	I	A	D	H	V	L	V	A
Template Known Secondary structure					T			.	.	.	.	.	.	.	.	.	.	.	.	.							T			T	T									S	S															T	T								S		T	T	S							S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.														.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		163	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		P	H	F	G	.	Y	A	D	R	I	Q	E	I	H	I	K	V	I	H	I	L	I	Q	L	I	E	K	E
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		A	T	R	G	V	G	H	S	L	S	P	V	G	L	I	A	V	V	N	L	L	L	A	E	I	A	V	R
Template Known Secondary structure						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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