Job Description P63224 Confidence 97.46% Date Thu Jan 5 12:07:56 GMT 2012 Rank 41 Aligned Residues 130 % Identity 15% Template c3iz6A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	A	I	Q	R	A	A	V	L	L	A	D	S	F	K	A	G	G	K	V	L	S	C	G	N	G	G	S	H	C	D	A	M	H	F	A	E	E	L	T	G	R	Y	R	E	N	R	P	G	Y	P	A	I	A	I	S	D	V	S	H	I	S	C	V	G	N	D	F	G	F	N	D	I	F	S	R	Y	V	E
Query Conservation
Alig confidence														.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	E	K	L	Q	L	A	A	R	V	I	V	.	A	I	E	N	P	Q	D	I	I	V	Q	S	A	R	P	Y	G	Q	R	A	V	L	K	F	A	Q	Y	T	G	A	H	A	I	A	G	R	H	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	F	T	N	Q	L	Q
Template Known Secondary structure														.		T	T	S	S									S															T						S				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T	T	T
Template Predicted Secondary structure														.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.																					110	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	R	E	G	D	V	L	L	G	I	S	T	S	G	N	S	A	N	V	I	K	A	I	A	A	A	R	E	K	G	M	K	V	I	T	L	T	G	K	D	G	G	K	M	A	G	T	A	D	I	E	I	R	V	P	H	F	G	Y	A	D	R	I	Q	E	I	H	I	K	V	I	H	I	L	I	Q	L	I
Query Conservation
Alig confidence																			.	.	.	.																									.	.								.	.									.	.	.
Template Conservation																			.	.	.	.																									.	.								.	.									.	.	.
Template Sequence		T	S	F	S	E	P	R	L	L	I	L	T	D	P	R	T	D	.	.	.	.	H	Q	P	I	K	E	S	A	L	G	N	I	P	T	I	A	F	C	D	T	D	S	P	M	.	.	R	Y	V	D	I	G	I	.	.	P	A	N	N	K	G	K	Q	.	.	.	S	I	G	C	L	F	W	L	L	A	R	M	V
Template Known Secondary structure		S		S	S			S					S		T	T	T	T	.	.	.	.											T									T	T	S		G	.	.	G	G		S				.	.		S			S	S	T		.	.	.
Template Predicted Secondary structure																			.	.	.	.																									.	.								.	.									.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.			.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.
		187	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		187	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions