Job Description P63224 Confidence 95.16% Date Thu Jan 5 12:07:56 GMT 2012 Rank 80 Aligned Residues 153 % Identity 9% Template c1tmoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																		.	.															.	.	.	.
Query SS confidence																		.	.															.	.	.	.
Query Sequence		H	A	I	Q	R	A	A	V	L	L	A	D	S	F	K	A	.	.	G	G	K	V	L	S	C	G	N	G	G	S	H	C	.	.	.	.	D	A	M	H	F	A	E	E	L	T	G	R	Y	R	E	N	R	P	G	Y	P	A	I	A	I	S	D	V	S	H	I	S	C	V	G	N	D	F	G	F	N	D	I	F
Query Conservation																		.	.															.	.	.	.
Alig confidence																		.	.															.	.	.	.
Template Conservation
Template Sequence		K	A	L	T	L	F	K	H	S	L	D	E	V	Q	T	Q	Y	G	P	S	G	L	H	A	G	Q	T	G	W	R	A	T	G	Q	L	H	S	S	T	S	H	M	Q	R	A	V	G	M	H	G	N	Y	V	K	K	I	G	D	Y	S	T	G	A	G	Q	T	I	L	P	Y	V	L	G	S	T	E	V	Y	A	Q
Template Known Secondary structure																		T		G	G	G											S		T	T	T												T	T				B						S	S	S	T	T									T	S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.															.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	Y	V	E	A	V	G	R	E	G	D	V	L	L	G	I	S	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	S	A	N	V	I	K	A	I	A	A	A	R	E	K	G	M	K	V	I	T	L	T	G	K	D	G	G	K	M	A	G	T	A	D	I	E	I	R	V	P	H	F	G	Y
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	S	W	P	L	I	L	E	H	S	D	T	I	V	L	W	S	N	D	P	Y	K	N	L	Q	V	G	W	N	A	E	T	H	E	S	F	A	Y	L	A	Q	L	K	E	K	V	K	Q	G	K	I	R	V	I	S	I	D	P	V	V	T	K	T	Q	A	Y	L	G	C	E	Q	L	Y	V	N	P	Q	T	D
Template Known Secondary structure													S						S							T	S			S	S	B				T															T	S	S							S	S									T								T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	R	I	Q	E	I	H	I	K	V	I	H	I	L	I	Q
Query Conservation
Alig confidence						.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		V	T	L	M	.	.	.	.	L	A	I	A	H	E	M	I	S
Template Known Secondary structure						.	.	.	.
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		250	.	.	.					.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions