Job Description P63224 Confidence 96.73% Date Thu Jan 5 12:07:56 GMT 2012 Rank 49 Aligned Residues 130 % Identity 18% Template c1s1hB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Resolution 11.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	A	I	Q	R	A	A	V	L	L	A	D	S	F	K	A	G	G	K	V	L	S	C	G	N	G	G	S	H	C	D	A	M	H	F	A	E	E	L	T	G	R	Y	R	E	N	R	P	G	Y	P	A	I	A	I	S	D	V	S	H	I	S	C	V	G	N	D	F	G	F	N	D	I	F	S	R	Y	V	E
Query Conservation
Alig confidence															.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	E	K	L	V	L	A	A	R	I	I	A	A	.	I	P	N	P	E	D	V	V	A	I	S	S	R	T	F	G	Q	R	A	V	L	K	F	A	A	H	T	G	A	T	P	I	A	G	R	F	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	F	T	N	Y	I	T
Template Known Secondary structure															.	T	T	T	T									S													T	S	S						S				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T	T	T
Template Predicted Secondary structure															.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																					.	.	.	.	.	.	110	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	R	E	G	D	V	L	L	G	I	S	T	S	G	N	S	A	N	V	I	K	A	I	A	A	A	R	E	K	G	M	K	V	I	T	L	T	G	K	D	G	G	K	M	A	G	T	A	D	I	E	I	R	V	P	H	F	G	Y	A	D	R	I	Q	E	I	H	I	K	V	I	H	I	L	I	Q	L	I
Query Conservation
Alig confidence																			.	.	.	.																									.	.								.	.									.	.	.
Template Conservation																			.	.	.	.																									.	.								.	.									.	.	.
Template Sequence		R	S	F	K	E	P	R	L	V	I	V	T	D	P	R	S	D	.	.	.	.	A	Q	A	I	K	E	A	S	Y	V	N	I	P	V	I	A	L	T	D	L	D	S	P	S	.	.	E	F	V	D	V	A	I	.	.	P	C	N	N	R	G	K	H	.	.	.	S	I	G	L	I	W	Y	L	L	A	R	E	V
Template Known Secondary structure		S		S				S					S		T	T	T	T	.	.	.	.											T									T	T	S		G	.	.	G	G		S				.	.		S		S	S				.	.	.
Template Predicted Secondary structure																			.	.	.	.																									.	.								.	.									.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.			160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180
		187	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		181	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions