 |
Job Description | P0ACB2 | Confidence | 56.28% | Date | Thu Jan 5 11:17:47 GMT 2012 |
Rank | 140 | Aligned Residues | 74 |
% Identity | 19% | Template | c2ejaB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; |
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus
|
Resolution | 1.90 Å |
|
 |
  |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | 130 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 140 | |
|
. | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  | . | . | . | . | . |
|
|
|
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | E | D | G | L | V | A | R | M | S | R | I | C | K | Q | T | V | P | E | M | I | V | M | S | D | T | C | F | C | E | Y | T | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | G | H | C | G | V | L | . |
. |
. |
. |
. |
C | E | H | G | V | D | N | . |
. |
D | A | T | L | E | N | L | G | K | Q | A | V | V | A | A | A |
Query Conservation |   |
  |   |   |
|   |
|   |   |
|
|
|   |
|
|   |   |
|
|   |
|   |
|   |   |
|
|
|
|
|   |
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|   | . | . | . | . | . |   |   |   |   |
|   |
| . | . |
|   |
|
|   |   |
|
|   |   |
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |
| . |   |   |   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
S | Q | N | A | Y | V | Y | E | I | I | K | R | V | K | E | A | Q | D | E | V | P | V | I | G | . |
F | A | G | A | P | F | T | L | L | S | Y | L | I | E | G | G | A | S | K | D | F | K | S | T | K | L | F | M | W | E | N | P | K | E | Y | K | R | L | M | D | I | L | T | E | T | V | L | A | Y | L | K | E | Q | I | K |
Template Known Secondary structure |   |
G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S | S |
|  |  |  | . |  |  |  |
|  |  |  |  |  |  |  |  |  | T | T | T |
|
| S | S |
|  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
112 | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
  |
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | G | A | D | F | I | A | P | S | A | A | M |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|   |
|   |
|   |   |
Template Sequence |   |
A | G | A | D | V | V | Q | I | F | D | S | W |
Template Known Secondary structure |   |
T | T |
| S |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|