 |
Job Description | P0ACB2 | Confidence | 33.66% | Date | Thu Jan 5 11:17:47 GMT 2012 |
Rank | 219 | Aligned Residues | 109 |
% Identity | 16% | Template | c2dgdD_ |
PDB info |
PDB header:lyase | Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; |
PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii
|
Resolution | 2.90 Å |
|
 |
  |   |
170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | |
|
240 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
Query Sequence |   |
G | Q | V | Q | A | I | R | Q | A | L | D | A | A | G | F | K | D | T | A | I | M | S | Y | S | T | K | F | A | S | S | F | Y | G | P | F | R | E | A | A | G | S | A | L | K | . |
. |
. |
. |
. |
G | D | R | K | S | Y | Q | M | N | P | M | N | R | R | E | A | I | R | E | S | L | L | D | E | A | Q | . |
. |
G | A | D |
Query Conservation |   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|   |
|   |
|   | . | . | . | . | . |
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|
|
|
|   |   |   |
|
|   |
| . | . |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |
|
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
Template Sequence |   |
I | P | E | E | S | V | Y | E | L | L | K | K | L | N | V | R | K | L | W | I | G | T | P | Y | I | K | E | R | T | L | E | E | V | E | W | W | R | N | K | G | F | E | I | V | G | Y | D | G | L | G | K | I | R | G | I | D | I | S | N | T | P | I | F | T | I | Y | R | L | V | K | R | H | L | N | E | V | L | K | A | D |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  |
|
|
|
| S |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | T | T | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . |
  |
  |   |
243 | . | . | . | . | |
. | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | L | M | V | K | . |
P | A | G | A | Y | L | D | I | V | R | E | L | R | E | R | T | E | L | P | I | G | A | Y | Q | V | S | G | E | Y | A | M | I | K | F | A |
Query Conservation |   |
  |   |
|
|
| . |
|
|
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|
| . | . | . | . |
|
|
|
|   |
|   |   |
|   |   |
Template Sequence |   |
A | V | Y | I | A | C | T | A | L | S | T | Y | E | A | V | Q | Y | L | H | E | D | L | D | X | P | V | . |
. |
. |
. |
V | S | E | N | A | A | A | X | W | E | A |
Template Known Secondary structure |   |
 |  |  |  |
|
| T | T | S |
|
| T | T |  |  |  |  |  |  |  |  |  | T | S |
|  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | |
|
|
|
200 | . | . | . | . | . | . | . | . | . | 210 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|