 |
Job Description | P0ACB2 | Confidence | 76.14% | Date | Thu Jan 5 11:17:47 GMT 2012 |
Rank | 93 | Aligned Residues | 82 |
% Identity | 21% | Template | c1ydnA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; |
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
|
Resolution | 2.30 Å |
|
 |
  |   |
51 | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
Predicted Secondary structure |   |
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | G | V | M | R | I | P | E | K | H | L | A | R | E | I | E | R | I | A | N | A | G | I | R | S | V | M | T | F | G | I | S | H | H | T | D | E | T | G | S | D | A | W | R | E | D | G | L | V | A | R | M | S | R | I | C | K | Q | T | V | P | E | M | I | V | M | S | D | T | C | F | C | E | Y | T | S | H | G | H | C |
Query Conservation |   |
|
|
|   |
|   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|
|
|
|   |   |   |
|
|   |   |
|
|   |
|   |   |   |   |
|   |
|   |   |
|
|
|   |
|
|   |   |
|
|   |
|   |
|   |   |
|
|
|
|
|   |
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
| . | . | . | . | . | . |   |
|
|   |
|   |   |   |
|   |   | . | . | . |   |   |   |
|
|   |   |
|   |   |   |   |
|   |
| . | . | . | . | . | . | . | . | . |   |
|   |   |
|   |
|
|
Template Sequence |   |
P | Y | D | G | P | V | T | P | Q | A | V | A | S | V | T | E | Q | L | F | S | L | G | C | H | E | V | S | L | . |
. |
. |
. |
. |
. |
G | D | T | I | G | R | G | T | P | D | T | . |
. |
. |
V | A | A | X | L | D | A | V | L | A | I | A | P | A | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
S | L | A | G | H | Y | H | D |
Template Known Secondary structure |   |
T | T | T |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  | . | . | . | . | . | . |  |  | T | T | S |
|
|
|  |  |  | . | . | . |  |  |  |  |  |  |  |  |  | T | T | S |
| G | G | . | . | . | . | . | . | . | . | . | G |  |  |  |  |  | B |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . |  |
|
|
|
|
|
|
|  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
147 | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 180 | . | . | . | . | . | |
|
|
. | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . |
  |
  |   |
131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | L | C | E | H | G | V | D | N | D | A | T | L | E | N | L | G | K | Q | A | V | V | A | A | A | A | G | A | D | F | I |
Query Conservation |   |
|
|   |   |   |   |   |
|   |
|
|   |
|
|   |   |
|
|   |   |
|
|
|   |
|   |
|
|
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|   |
|
|
|   |
|
|   |
|
|
|   |   |
|
|
|   |   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | G | G | R | A | L | D | N | I | R | V | S | L | E | K | G | L | R | V | F |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
209 | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|