Email l.a.kelley@imperial.ac.uk Description P77731 Date Thu Jan 5 12:32:12 GMT 2012 Unique Job ID dd9193e546759fff

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2bdra1 100.0 51 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 2 d1xsqa_ 100.0 95 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 3 c3d0jA_ 98.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 4 c3mpbA_ 90.9 13 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 5 c2oa2A_ 89.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 6 c3kgzA_ 88.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 7 c3jzvA_ 88.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 8 d1nxma_ 88.5 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 9 d2phla2 86.7 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 10 d1zvfa1 85.9 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 11 d2pa7a1 85.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 12 c2i45C_ 85.2 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 13 d1v70a_ 84.6 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 14 c3ejkA_ 81.1 15 PDB header:isomerase Chain: A: PDB Molecule:dtdp sugar isomerase; PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution 15 d1o4ta_ 78.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 16 c2oziA_ 76.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 17 c2y0oA_ 73.1 15 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 18 c3cewA_ 65.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 19 c2gu9B_ 64.6 14 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 20 c3d82A_ 63.8 22 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 21 c2fqpD_ not modelled 61.7 11 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 22 c2vqaC_ not modelled 61.0 12 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 23 d2et1a1 not modelled 60.4 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 24 c3h8uA_ not modelled 59.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 25 d1juha_ not modelled 59.6 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 26 d1ep0a_ not modelled 53.5 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 27 d1wlta1 not modelled 49.6 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 28 c2o8qA_ not modelled 45.7 18 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 29 c1cauB_ not modelled 43.2 12 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 30 d2ixha1 not modelled 39.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 31 d2f4pa1 not modelled 36.3 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 32 d1vj2a_ not modelled 35.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 33 d1j3pa_ not modelled 35.5 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 34 c3ibmB_ not modelled 35.3 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 35 d2cupa1 not modelled 34.8 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 36 d1x82a_ not modelled 34.0 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 37 d1x63a1 not modelled 33.6 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 c2c0zA_ not modelled 30.4 17 PDB header:isomerase Chain: A: PDB Molecule:novw; PDBTitle: the 1.6 a resolution crystal structure of novw: a 4-keto-6-2 deoxy sugar epimerase from the novobiocin biosynthetic3 gene cluster of streptomyces spheroides 39 d1rc6a_ not modelled 29.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 40 c2cauA_ not modelled 28.0 11 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 41 d2fcta1 not modelled 26.3 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 42 d1y3ta1 not modelled 25.4 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 43 c3l2hD_ not modelled 25.2 17 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 44 d2ixca1 not modelled 23.5 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 45 d1ukwa2 not modelled 21.5 21 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 46 c3chxE_ not modelled 20.7 16 PDB header:membrane protein Chain: E: PDB Molecule:pmob; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 47 d1j58a_ not modelled 20.5 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 48 d1uija1 not modelled 20.1 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 49 c3rgbA_ not modelled 18.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 50 c3rfrI_ not modelled 17.9 16 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 51 d1oi6a_ not modelled 17.2 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 52 c3ht2A_ not modelled 16.4 13 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 53 d1fxza2 not modelled 16.3 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 54 d1lr5a_ not modelled 15.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 55 d2c0za1 not modelled 15.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 56 c3rykB_ not modelled 14.5 19 PDB header:isomerase Chain: B: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: 1.63 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 3,5-epimerase (rfbc) from bacillus anthracis str. ames with tdp and3 ppi bound 57 d1vyqa1 not modelled 14.2 38 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 58 c1yewI_ not modelled 13.7 29 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 59 c3i7dB_ not modelled 12.8 8 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 60 c1sefA_ not modelled 12.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 61 d1sefa_ not modelled 12.6 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 62 c3nnlB_ not modelled 12.6 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 63 c2xdvA_ not modelled 11.8 16 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 64 d2b8ma1 not modelled 11.8 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 65 d1to3a_ not modelled 11.5 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 66 c2xxzA_ not modelled 11.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain 67 d2jzaa1 not modelled 11.3 14 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 68 d1dgwa_ not modelled 10.9 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 69 d1o7na1 not modelled 10.9 3 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 70 d1oiha_ not modelled 10.9 29 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 71 d2jo6a1 not modelled 10.7 17 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 72 c1upiA_ not modelled 10.6 13 PDB header:epimerase Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465) 73 d2cupa2 not modelled 10.5 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 74 d1vrba1 not modelled 10.2 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 75 d1dzra_ not modelled 9.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 76 c3fjsC_ not modelled 9.6 13 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 77 d1x4da1 not modelled 9.2 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 78 c3h7yA_ not modelled 8.7 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 79 c2vpvA_ not modelled 8.5 12 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 80 c1za4A_ not modelled 8.0 19 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin 1; PDBTitle: crystal structure of the thrombospondin-1 n-terminal domain2 in complex with arixtra 81 c3ic3C_ not modelled 8.0 35 PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 82 c2d40C_ not modelled 7.8 14 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 83 c2d9oA_ not modelled 7.7 25 PDB header:rna binding protein Chain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17; PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634 84 c3es1A_ not modelled 7.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 85 d1uika2 not modelled 7.7 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 86 d2erfa1 not modelled 7.1 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Laminin G-like module 87 d1yfua1 not modelled 7.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 88 c3ctrA_ not modelled 7.0 57 PDB header:hydrolase Chain: A: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of the rrm-domain of the poly(a)-specific2 ribonuclease parn bound to m7gtp 89 d2d8za1 not modelled 6.9 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 90 d1sq4a_ not modelled 6.9 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 91 c3rnsA_ not modelled 6.5 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 92 d1txka1 not modelled 6.4 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 93 c3bu7A_ not modelled 6.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 94 d3bu7a1 not modelled 6.4 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 95 d2cura2 not modelled 6.0 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 96 d3ehwa1 not modelled 6.0 31 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 97 c2pfwB_ not modelled 6.0 14 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 98 d1ei5a2 not modelled 5.9 13 Fold:Streptavidin-like Superfamily:D-aminopeptidase, middle and C-terminal domains Family:D-aminopeptidase, middle and C-terminal domains 99 d1zrra1 not modelled 5.7 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase