Job Description P45394 Confidence 1.79% Date Thu Jan 5 12:02:31 GMT 2012 Rank 75 Aligned Residues 169 % Identity 7% Template c2w2eA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin; PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin,2 aqy1, in a closed conformation at ph 3.5 Resolution 1.15 Å

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		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.									.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.
Query Sequence		R	Q	A	E	R	Q	G	T	D	S	L	T	R	E	Q	L	A	E	L	P	R	D	G	G	L	.	.	.	.	.	.	.	.	P	V	A	F	L	W	L	G	I	A	L	I	I	M	P	V	A	T	R	M	V	V	D	N	A	T	V	L	A	N	Y	F	A	I	S	E	L	T	M	G	L	T	A	I	A	I	G
Query Conservation																											.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	E	I	K	P	E	D	A	P	Y	I	T	N	A	Y	K	P	A	Y	A	R	W	G	F	G	S	D	S	V	R	N	H	F	I	A	M	S	G	E	F	V	G	T	F	L	F	L	W	S	A	F	V	I	A	Q	I	A	N	Q	A	P	E	T	P	D	G	G	S	N	P	A	Q	L	I	M	I	S	F	G
Template Known Secondary structure							G	G	G	T					S					G	G	G	G			T	T	T	T	S																														T	T	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.																											.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	S	L	P	E	L	A	T	A	I	A	G	V	R	K	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	I	A	V	G	N	I	I	G	A	N	I	F	N	I	V	I	V	L	G	L	P	A	L	I	T	P	G	E	I	D	P	L	A	Y	S
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	F	G	V	M	V	G	V	F	I	T	Y	R	V	S	G	G	N	L	N	P	A	V	T	L	A	L	V	L	A	R	A	I	P	P	F	R	G	I	L	M	A	F	T	Q	I	V	A	G	M	A	A	A	G	A	A	S	A	M	T	P	G	E	I	A	F	A	N	A	L	G	G	G	A	S	R	T	R	G
Template Known Secondary structure														T	T	T	T					S										T	T	S	S																											S		S	S				S					T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	Y	S	V	M	L	L	V	S	I	I	F	A	L	L	C	W	R	R	S	P	Q	P	G	R	G	V	G	V	L	L	T	G	G	F	I	V	W	L	A	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	L	E	A	F	G	T	A	I	L	C	L	T	V	L	M	L	A	V	E	K	H	R	A	T	W	F	A	P	F	V	I	G	I	A	L	L	I	A	H	L	I
Template Known Secondary structure																				T	T	S		S	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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