Job Description P0A962 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 9 Aligned Residues 315 % Identity 24% Template c2wltA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution Resolution 1.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																				.																																																													.
Query SS confidence																				.																																																													.
Query Sequence		K	S	I	Y	V	A	Y	T	G	G	T	I	G	M	Q	R	S	E	.	Q	G	Y	I	P	V	S	G	H	L	Q	R	Q	L	A	L	M	P	E	F	H	R	P	E	M	P	D	F	T	I	H	E	Y	T	P	L	M	D	S	S	D	M	T	P	E	D	W	Q	H	I	A	E	D	I	K	A	H	Y	D	D	.
Query Conservation																				.																																																													.
Alig confidence																				.																							.	.												.																									.
Template Conservation																																											.	.												.
Template Sequence		P	T	I	A	L	L	A	T	G	G	T	I	A	G	S	G	A	S	L	G	S	Y	K	S	G	E	L	G	V	K	E	L	L	K	A	I	P	S	L	N	K	.	.	I	A	R	I	Q	G	E	Q	V	S	N	.	I	G	S	Q	D	M	N	E	E	I	W	F	K	L	A	Q	R	A	Q	E	L	L	D	D	S
Template Known Secondary structure											S	G	G	G		B			T	T	S			B	T	T		S		T	T					T			S	G	G	G	.	.	T											.			G	G	G																		T	S	T
Template Predicted Secondary structure																																											.	.												.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
			82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																																	.	.
Query SS confidence		.																																																																	.	.
Query Sequence		.	Y	D	G	F	V	I	L	H	G	T	D	T	M	A	Y	T	A	S	A	L	S	F	M	L	E	N	L	G	K	P	V	I	V	T	G	S	Q	I	P	L	A	E	L	R	S	D	G	Q	I	N	L	L	N	A	L	Y	V	A	A	N	Y	P	I	N	.	.	E	V	T	L	F	F	N	N	R	L	Y	R	G
Query Conservation		.																																																																	.	.
Alig confidence		.																											.																																						.	.
Template Conservation																													.
Template Sequence		R	I	Q	G	V	V	I	T	H	G	T	D	T	L	E	E	S	A	Y	F	L	N	L	V	L	H	S	.	T	K	P	V	V	L	V	G	A	M	R	N	A	S	S	L	S	A	D	G	A	L	N	L	Y	E	A	V	S	V	A	V	N	E	K	S	A	N	K	G	V	L	V	V	M	D	D	T	I	F	S	V
Template Known Secondary structure		T										S	S	S															.	S	S								S	S		T	T	S	T	T		S															G	G	G	T	T	S		S					T	T					T
Template Predicted Secondary structure																													.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		N	R	T	T	K	A	H	A	D	G	F	D	A	F	A	S	P	N	L	P	P	L	L	E	A	G	I	H	I	R	R	L	N	T	P	P	A	P	H	G	E	G	.	.	.	.	E	L	I	V	H	P	I	T	P	Q	P	I	G	V	V	T	I	Y	P	G	I	S	A	D	V	V	R	N	F	L	R	Q	P	V
Query Conservation																																												.	.	.	.
Alig confidence																																												.	.	.	.
Template Conservation
Template Sequence		R	E	V	V	K	T	H	T	T	H	V	S	T	F	K	A	L	N	S	G	A	I	G	S	V	Y	Y	G	K	T	R	Y	Y	M	Q	P	L	R	K	H	T	T	E	S	E	F	S	L	S	Q	L	K	T	P	L	P	K	V	D	I	I	Y	T	H	A	G	M	T	P	D	L	F	Q	A	S	L	N	S	H	A
Template Known Secondary structure		T	T					S	S	S		T	T					T	T	T			S					T	T										S			G	G	G		S			G	G	G			S	S											T	T			T									T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	I	L	R	S	Y	G	V	G	N	A	P	Q	N	K	A	F	L	Q	E	L	Q	E	A	S	D	R	G	I	V	V	V	N	L	T	Q	C	M	S	G	K	V	N	M	G	G	Y	A	T	G	N	A	L	A	H	A	G	V	I	G	G	A	D	M	T	V	E	A	T	L	T	K	L	H	Y	L	L	S
Query Conservation
Alig confidence																.	.																													.	.	.	.
Template Conservation																.	.																													.	.	.	.
Template Sequence		K	G	V	V	I	A	G	V	G	N	G	N	V	S	.	.	A	G	F	L	K	A	M	Q	E	A	S	Q	M	G	V	V	I	V	R	S	S	R	V	G	S	G	G	V	.	.	.	.	T	S	G	E	I	D	D	K	A	Y	G	F	I	T	S	D	N	L	N	P	Q	K	A	R	V	L	L	Q	L	A	L	T
Template Known Secondary structure		S							B	T	T	T	B			.	.													T	T								S	S	S	S	S			.	.	.	.		S	S	S	S						T					T	T
Template Predicted Secondary structure																.	.																													.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	L	D	T	E	T	I	R	K	A	M	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	N	D	K	A	K	I	Q	E	M	F	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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