Job Description P0A962 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 2 Aligned Residues 328 % Identity 31% Template c2d6fA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) Resolution 3.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		Q	K	K	S	I	Y	V	A	Y	T	G	G	T	I	G	M	Q	R	S	.	E	Q	G	Y	I	P	V	S	G	H	L	Q	R	Q	L	A	L	M	P	E	F	H	R	P	E	M	P	D	F	T	I	H	E	Y	T	P	L	M	D	S	S	D	M	T	P	E	D	W	Q	H	I	A	E	D	I	K	A	H	Y	D
Query Conservation																					.
Alig confidence																					.																								.	.												.
Template Conservation																																													.	.												.
Template Sequence		E	L	P	D	V	S	I	I	S	T	G	G	T	V	A	S	I	I	D	Y	R	T	G	A	V	H	P	A	F	T	A	D	D	L	L	R	A	N	P	E	L	L	D	.	.	I	A	N	I	R	G	R	A	V	F	N	.	I	L	S	E	N	M	K	P	E	Y	W	V	E	T	A	R	A	V	Y	G	E	I	K
Template Known Secondary structure		S	S								S	S									T	T	T	S								T	T							G	G	G	G	G	.	.	T											.			G	G	G
Template Predicted Secondary structure																																													.	.												.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		81		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure			.																																																																										.	.	.	.	.
Query SS confidence			.																																																																										.	.	.	.	.
Query Sequence		D	.	Y	D	G	F	V	I	L	H	G	T	D	T	M	A	Y	T	A	S	A	L	S	F	M	L	E	N	L	G	K	P	V	I	V	T	G	S	Q	I	P	L	A	E	L	R	S	D	G	Q	I	N	L	L	N	A	L	Y	V	A	A	N	Y	P	I	N	E	V	T	L	F	F	N	N	R	.	.	.	.	.
Query Conservation			.																																																																										.	.	.	.	.
Alig confidence			.																											.																																					.										.	.	.	.	.
Template Conservation																														.																																					.
Template Sequence		D	G	A	D	G	V	V	V	A	H	G	T	D	T	M	H	Y	T	S	A	A	L	S	F	M	L	R	T	.	P	V	P	V	V	F	T	G	A	Q	R	S	S	D	R	P	S	S	D	A	S	L	N	I	Q	C	S	V	R	A	A	T	S	E	I	A	.	E	V	T	V	C	M	H	A	T	M	D	D	L	S
Template Known Secondary structure		T	T		S								T	T	T															.	S	S								S	S		T	T	S	T	T		T														S	S			.	S							S	S	S	S	S	S
Template Predicted Secondary structure																														.																																					.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.
				155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure		.	.																																									.
Query SS confidence		.	.																																									.
Query Sequence		.	.	L	Y	R	G	N	R	T	T	K	A	H	A	D	G	F	D	A	F	A	S	P	N	L	P	P	L	L	E	A	G	I	H	I	R	R	L	N	T	P	P	.	A	P	H	G	E	G	E	L	I	V	H	P	I	T	P	Q	P	I	G	V	V	T	I	Y	P	G	I	S	A	D	V	V	R	N	F	L	R
Query Conservation		.	.																																									.
Alig confidence		.	.																																									.
Template Conservation
Template Sequence		C	H	L	H	R	G	V	K	V	R	K	M	H	T	S	R	R	D	T	F	R	S	M	N	A	L	P	L	A	E	V	T	P	D	G	I	K	I	L	E	E	N	Y	R	K	R	G	S	D	E	L	E	L	S	D	R	V	E	E	R	V	A	F	I	K	S	Y	P	G	I	S	P	D	I	I	K	W	H	L	D
Template Known Secondary structure							G	G	G					S	S	S		T	T					S	S	S			S					T	T												S	T	T	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	V	K	A	L	I	L	R	S	Y	G	V	G	N	A	P	Q	N	K	A	F	L	Q	E	L	Q	E	A	S	D	R	G	I	V	V	V	N	L	T	Q	C	M	S	G	K	V	N	M	G	G	Y	A	T	G	N	A	L	A	H	A	G	V	I	G	G	A	D	M	T	V	E	A	T	L	T	K	L	H	Y
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		E	G	Y	R	G	I	V	I	E	G	T	G	L	G	H	C	P	.	.	D	T	L	I	P	V	I	G	E	A	H	D	M	G	V	P	V	A	M	T	S	Q	C	L	N	G	R	V	N	M	N	V	Y	S	T	G	R	R	L	L	Q	A	G	V	I	P	C	D	D	M	L	P	E	V	A	Y	V	K	M	C	W
Template Known Secondary structure		T	T		S							B	T	T	T	B			.	.	G	G	G										T	T								T	T		S	S				T	T	S	S									T	T					T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	S	Q	E	L	D	T	E	T	I	R	K	A	M	S	Q	N	L	R	G	E	L	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	G	Q	T	D	D	P	E	M	A	R	E	M	M	R	E	N	I	A	G	E	I	N	E
Template Known Secondary structure			T	T	T													S		S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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