Job Description P0A962 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 3 Aligned Residues 328 % Identity 30% Template c1zq1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																				.																																																													.
Query SS confidence																				.																																																													.
Query Sequence		K	K	S	I	Y	V	A	Y	T	G	G	T	I	G	M	Q	R	S	.	E	Q	G	Y	I	P	V	S	G	H	L	Q	R	Q	L	A	L	M	P	E	F	H	R	P	E	M	P	D	F	T	I	H	E	Y	T	P	L	M	D	S	S	D	M	T	P	E	D	W	Q	H	I	A	E	D	I	K	A	H	Y	D	.
Query Conservation																				.																																																													.
Alig confidence																				.																								.	.												.																								.
Template Conservation																																												.	.												.
Template Sequence		L	P	E	V	T	I	I	G	T	G	G	T	I	A	S	R	I	D	Y	E	T	G	A	V	Y	P	A	F	T	A	E	E	L	A	K	A	L	P	E	I	F	E	.	.	V	A	N	V	K	P	K	L	L	F	N	.	I	F	S	E	D	X	K	P	K	H	W	V	K	I	A	H	E	V	A	K	A	L	N	S
Template Known Secondary structure										S	S									T	T	T	T																G	G	G	G	G	.	.	T	S										.			G	G	G
Template Predicted Secondary structure																																												.	.												.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		D	Y	D	G	F	V	I	L	H	G	T	D	T	M	A	Y	T	A	S	A	L	S	F	M	L	E	N	L	G	K	P	V	I	V	T	G	S	Q	I	P	L	A	E	L	R	S	D	G	Q	I	N	L	L	N	A	L	Y	V	A	A	N	Y	P	I	N	E	V	T	L	F	F	N	N	R	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																																																		.										.	.	.	.	.	.
Template Conservation																																																																		.
Template Sequence		G	D	Y	G	V	V	V	A	H	G	T	D	T	X	G	Y	T	A	A	A	L	S	F	X	L	R	N	L	G	K	P	V	V	L	V	G	A	Q	R	S	S	D	R	P	S	S	D	A	A	X	N	L	I	C	S	V	R	X	A	T	S	E	V	A	.	E	V	X	V	V	X	H	G	E	T	G	D	T	Y	C
Template Known Secondary structure		T		S								T	T	T												S	B	T			S								S	S		T	T	S	T	T		S													T	S	S	B		.	S							S	S	S	S	S	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
			155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure		.																																	.	.
Query SS confidence		.																																	.	.
Query Sequence		.	L	Y	R	G	N	R	T	T	K	A	H	A	D	G	F	D	A	F	A	S	P	N	L	P	P	L	L	E	A	G	I	H	.	.	I	R	R	L	N	T	P	P	A	P	H	G	E	G	E	L	I	V	H	P	I	T	P	Q	P	I	G	V	V	T	I	Y	P	G	I	S	A	D	V	V	R	N	F	L	R
Query Conservation		.																																	.	.
Alig confidence		.																																	.	.
Template Conservation
Template Sequence		L	A	H	R	G	T	K	V	R	K	X	H	T	S	R	R	D	A	F	R	S	I	N	D	V	P	I	A	K	I	W	P	N	G	E	I	E	F	L	R	K	D	Y	R	K	R	S	D	E	E	V	E	V	D	D	K	I	E	E	K	V	A	L	V	K	V	Y	P	G	I	S	S	E	I	I	D	F	L	V	D
Template Known Secondary structure						T	T	S					S	S	S		G	G	G				S	S	S			S					T	T	S					S		S		S		B			S				B																S	S			T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	V	K	A	L	I	L	R	S	Y	G	V	G	N	A	P	Q	N	K	A	F	L	Q	E	L	Q	E	A	S	D	R	G	I	V	V	V	N	L	T	Q	C	M	S	G	K	V	N	M	G	G	Y	A	T	G	N	A	L	A	H	A	G	V	I	G	G	A	D	M	T	V	E	A	T	L	T	K	L	H	Y
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		K	G	Y	K	G	I	V	I	E	G	T	G	L	G	H	T	P	N	D	.	.	I	I	P	S	I	E	R	A	V	E	E	G	V	A	V	C	X	T	S	Q	C	I	Y	G	R	V	N	L	N	V	Y	S	T	G	R	K	L	L	K	A	G	V	I	P	C	E	D	X	L	P	E	T	A	Y	V	K	L	X	W
Template Known Secondary structure		T	T		S							B	T	T	T	B			T	T	.	.	T										T	T								S	S	S	S	S				T	T	S	S									T	T					T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	S	Q	E	L	D	T	E	T	I	R	K	A	M	S	Q	N	L	R	G	E	L	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	G	H	T	Q	N	L	E	E	V	R	K	X	X	L	T	N	Y	A	G	E	I	T	P
Template Known Secondary structure				T	T												T	S		S	S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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