Job Description P36928 Confidence 99.72% Date Thu Jan 5 11:53:57 GMT 2012 Rank 28 Aligned Residues 340 % Identity 14% Template c3qb0C_ PDB info PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp Resolution 3.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	F	D	Y	G	T	A	N	C	S	V	A	V	M	R	D	G	K	P	H	L	L	K	M	E	N	D	S	T	L	L	P	S	M	L	C	A	P	T	R	E	A	V	S	E	W	L	Y	R	H	H	D	V	P	A	D	D	D	E	T	Q	A	L	L	R	R	A	I	R	Y	N	R	E	E	D	I	D	V	T
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	I	D	P	G	S	Y	T	T	N	I	G	Y	S	G	S	D	F	P	Q	S	I	.	.	.	.	.	.	.	.	L	P	S	V	Y	G	K	Y	T	A	D	E	G	N	K	K	I	F	S	E	Q	S	I	G	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S							T	T		S	S		S			.	.	.	.	.	.	.	.			S						S	S		S	S							T	T	G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.									40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	S	V	Q	F	G	L	S	S	L	A	Q	Y	I	D	D	P	E	E	V	W	F	V	K	S	P	K	S	F	L	G	A	S	G	L	K	P	Q	Q	V	A	L	F	E	D	L	V	C	A	M	M	L	H	I	R	Q	Q	A	Q	A	Q	L	P	E	A	I	T	Q	A	V	I	G	R	P	I	N	F	Q	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	D	Y	E	L	K	P	I	I	E	N	G	L	V	I	D	W	.	.	.	.	.	.	.	.	.	.	D	T	A	Q	E	Q	W	Q	W	A	L	Q	N	.	.	.	.	.	.	.	.	E	L	Y	L	N	S	N	S	G	I	P	A	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						S			T	T			S			.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	T	S			S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
																			66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.											.	.	.	.	.	.	90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		L	G	G	D	E	A	N	T	Q	A	Q	G	I	L	E	R	A	A	.	K	R	A	G	F	R	D	V	V	F	Q	Y	E	P	V	A	A	G	L	D	Y	E	A	T	L	Q	E	E	K	R	V	L	V	V	D	I	G	G	G	T	T	D	C	S	L	L	L	M	G	P	Q	W	R	S	R	L	D	R	E	A	S
Query Conservation																				.
Alig confidence																				.																								.	.	.	.	.																				.	.												.
Template Conservation																																												.	.	.	.	.																				.	.												.
Template Sequence		T	E	P	V	W	N	S	T	E	N	R	K	K	S	L	E	V	L	L	E	G	M	Q	F	E	A	C	Y	L	A	P	T	S	T	C	V	S	F	A	A	G	R	.	.	.	.	.	P	N	C	L	V	V	D	I	G	H	D	T	C	S	V	S	P	I	V	.	.	D	G	M	T	L	S	K	S	T	R	R	.
Template Known Secondary structure					T	T															T	T	S			S																T		.	.	.	.	.	S	S								S	S									.	.	T	T				G	G	G				.
Template Predicted Secondary structure																																												.	.	.	.	.																				.	.												.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	H	S	G	C	R	I	G	G	N	D	L	D	I	A	L	A	F	K	N	L	M	P	L	L	G	M	G	G	E	T	E	K	G	I	A	L	P	I	L	P	W	W	N	A	V	A	I	N	D	V	P	A	Q	S	D	F	Y	S	S	A	N	G	R	L	L	N	D	L	V	R	D	A	R	E	P	E	K
Query Conservation
Alig confidence		.	.	.	.	.	.																																																																								.	.	.
Template Conservation		.	.	.	.	.	.																																																																								.	.	.
Template Sequence		.	.	.	.	.	.	N	F	I	A	G	K	F	I	N	H	L	I	K	K	A	L	E	P	K	E	I	I	P	L	F	A	I	K	Q	R	K	P	E	F	I	K	K	T	F	D	Y	E	V	D	K	S	L	Y	D	Y	A	N	N	R	G	F	F	Q	E	C	K	E	T	L	C	H	I	C	P	T	K	.	.	.
Template Known Secondary structure		.	.	.	.	.	.		S		S												T	T	T	S					S	T	T					S	S	S							S	S														T									T					S	S		.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																																																								.	.	.
Template SS confidence
								183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	L	L	Q	K	V	W	R	Q	R	L	S	Y	R	L	V	R	S	A	E	E	C	K	I	A	L	S	S	V	A	E	T	R	A	S	L	P	F	I	S	N	E	L	A	T	L	I	S	Q	R	G	L	E	S	A	L	S	Q	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	E	E	T	K	T	E	L	S	S	T	A	K	R	S	I	E	S	P	W	.	.	.	N	E	E	I	V	F	D	N	E	T	R	Y	G	F	A	E	E	L	F	L	P	K	E	D	D	I	P	A	N	W	P	R	S	N	S	G	V	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T									S	S	.	.	.	S																T	T	T	S			T	T	T	S		T	T	S				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
																				254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.				.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
																				383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400						.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.					.	.	.	.	.							.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.																								.	.	.	.						.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.																								.	.	.	.						.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	I	L	E	Q	V	Q	L	A	L	D	N	A	Q	E	K	P	.	.	.	.	.	D	V	I	Y	L	T	G	G	S	A	R	S	P	L	I	K	K	A	L	A	E	Q	L	.	.	.	.	P	G	I	P	I	.	.	.	.	.	.	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.																								.	.	.	.						.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.																								.	.	.	.						.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	W	R	N	D	Y	V	P	L	K	R	T	K	N	N	E	L	I	G	L	A	D	L	V	Y	S	S	I	M	S	S	D	V	D	L	R	A	T	L	A	H	N	V	V	L	T	G	G	T	S	S	I	P	G	L	S	D	R	L	M	T	E	L	N	K	I	L	P	S	L	K	F	R	I	L	T	T	G	H
Template Known Secondary structure					S																											T	S		T	T	T						T	T					S	G	G	G	G	S	T	T													S	T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	D	D	F	G	S	V	T	A	G	L	A	R	W	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	E	R	Q	Y	Q	S	W	L	G	G	S	I	L	T	S
Template Known Secondary structure		G	G	G	G	G	S											T
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.