Return to main results Retrieve Phyre Job Id

Job DescriptionP36928
Confidence99.92%DateThu Jan 5 11:53:57 GMT 2012
Rank22Aligned Residues305
% Identity17%Templatec3dwlB_
PDB info PDB header:structural proteinChain: B: PDB Molecule:actin-related protein 3; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
Resolution3.78 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  IGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLCAPTREAVSEWLYRHHDVPADDDETQALLRRAIRYNREEDIDVT
Query Conservation 







 
 

         
         

 
                                            
Alig confidence 






















........












....................................
Template Conservation 



 

   
 
      
   ........


 
        ....................................
Template Sequence  IIMDNGTGYSKLGYAGNDAPSYV. . . . . . . . FPTVIATRTEDLD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

SSTTSSS
S........





SS
....................................
Template Predicted Secondary structure 








........




....................................
Template SS confidence 















































































   8.10.........20.........30 .........40...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  AKSVQFGLSSLAQYIDDPEEVWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINFQG
Query Conservation        
                    
  
               
    
  
                 
 
     
Alig confidence  ...






















.............

















.........













Template Conservation  ...   
  
            
   .............
 
 
       
     .........  
        


Template Sequence  . . . FFIGNDALKKASAGYSLDYPIRH. . . . . . . . . . . . . GQIENWDHMERFWQQSLF. . . . . . . . . KYLRCEPEDHYFLL
Template Known Secondary structure  ...
TT




ST.............T

.........TTS


GGG
Template Predicted Secondary structure  ...











.............


.........







Template SS confidence 















































































   74.....80.........90...... ...100.........110.... .....120........
 
   163......170.........180 .........190.........200.... .....210.........220.........230........
Predicted Secondary structure 




.







...




















Query SS confidence 

















.























. . .

































Query Sequence  LGGDEANTQAQGILERAA. KRAGFRDVVFQYEPVAAGLDYEAT. . . LQEEKRVLVVDIGGGTTDCSLLLMGPQWRSRLDR
Query Conservation    
             
 .  

   
 

 

 


      ...      


 
 



 
 
              
Alig confidence 

















.























...
























.........
Template Conservation    
          
     
      
        
    
            



 
   
 
  
  
.........
Template Sequence  TEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEG. . . . . . . . .
Template Known Secondary structure 
TT

TT

SGGGGSTTT
S



SSS
TT.........
Template Predicted Secondary structure 




























.........
Template SS confidence 















































































   129130.........140.........150.........160.........170.........180.........190.........
 
   239240.........250.........260.........270.........280.........290.........300.........310........
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  EASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEKGIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDARE
Query Conservation              

   
  
                                                           
Alig confidence 








































.......................................
Template Conservation              

  
   
            
       .......................................
Template Sequence  YVIGSSIKTMPLAGRDVTYFVQSLLRLKTAERIKEECCYVC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
GGG

S

TT





.......................................
Template Predicted Secondary structure 




.......................................
Template SS confidence 















































































   200.........210.........220.........230.........240
 
   319320.........330.........340.........350.........360.........370.........380.........390........
Predicted Secondary structure 














Query SS confidence 















































































Query Sequence  PEKVALLQKVWRQRLSYRLVRSAEECKIALSSVAETRASLPFISNELATLISQRGLESALSQPLTRILEQVQLALDNAQE
Query Conservation                    
    
 

  

                   


   
         
   
   
     
Alig confidence  ......................

























































Template Conservation  ......................                 
                          
   
   
     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . PDIVKEFSRFDRLKYASIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPI
Template Known Secondary structure  ......................S
TT


B


B

TSGGGGT
GGGT
SS

S
TS
Template Predicted Secondary structure  ......................
























Template SS confidence 















































































   249250.........260.........270.........280.........290.........300......
 
   399 400.........410.........420.... .....430.........440......
Predicted Secondary structure 
.....









.........





Query SS confidence 
. . . . .
























. . . . . . . . .





















Query Sequence  K. . . . . PDVIYLTGGSARSPLIKKALAEQLP. . . . . . . . . GIPIAGGDDFGSVTAGLARWAE
Query Conservation   .....

 
 



 

 
 
   
   
 .........   
   
   


 


  
 
Alig confidence 
.....
























.........





















Template Conservation       
   


 

 
 



  

  

          
 
     
    
 



 
 
Template Sequence  DVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERGVDVNVISHKRQRNAVWFGGSLLAQ
Template Known Secondary structure 
SGGG
STTTTTT







TT
TT
Template Predicted Secondary structure 






















Template SS confidence 





























































   321........330.........340.........350.........360.........370.........380..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions