Job Description P02930 Confidence 100.00% Date Thu Jan 5 10:57:42 GMT 2012 Rank 3 Aligned Residues 393 % Identity 17% Template c3pikA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusc; PDBTitle: outer membrane protein cusc Resolution 2.30 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	M	Q	V	Y	Q	Q	A	R	L	S	N	P	E	L	R	K	S	A	A	D	R	D	A	A	F	E	K	I	N	E	A	R	S	P	L	L	P	Q	L	G	L	G	A	D	Y	T	Y	S	N	G	Y	R	D	A	N	G	I	N	S	N	A	T	S	A	S	L	Q	L	T	Q	S	I	F	D	M	S	K	W
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		Q	V	K	T	L	I	S	E	A	L	V	N	N	R	D	L	R	M	A	T	L	K	V	Q	E	A	R	A	Q	Y	R	L	T	D	A	D	R	Y	P	Q	L	N	G	E	G	S	G	S	W	S	G	N	L	K	.	G	N	T	A	T	T	R	E	F	S	T	G	L	N	A	S	F	D	L	D	F	F	G	R	L
Template Known Secondary structure																																					T	T	S															S	S	.	S																				T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		104		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		R	.	A	L	T	L	Q	E	K	A	A	G	I	Q	D	V	T	Y	Q	T	D	Q	Q	T	L	I	L	N	T	A	T	A	Y	F	N	V	L	N	A	I	D	V	L	S	Y	T	Q	A	Q	K	E	A	I	Y	R	Q	L	D	Q	T	T	Q	R	F	N	V	G	L	V	A	I	T	D	V	Q	N	A	R	A	Q
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		K	N	M	S	E	A	E	R	Q	N	Y	L	A	T	E	E	A	Q	R	A	V	H	I	L	L	V	S	N	V	A	Q	S	Y	F	N	Q	Q	L	A	Y	A	Q	L	Q	I	A	E	E	T	L	R	N	Y	Q	Q	S	Y	A	F	V	E	K	Q	L	L	T	G	S	S	N	V	L	A	L	E	Q	A	R	G	V
Template Known Secondary structure																																																																		T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	T	V	L	A	N	E	V	T	A	R	N	N	L	D	N	A	V	E	Q	L	R	Q	I	T	G	N	Y	Y	P	E	L	A	A	L	N	V	E	N	F	K	T	D	K	P	Q	P	V	N	A	L	L	K	E	A	E	K	R	N	L	S	L	L	Q	A	R	L	S	Q	D	L	A	R	E	Q	I	R	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	S	T	R	S	D	I	A	K	R	Q	G	E	L	A	Q	A	N	N	A	L	Q	L	L	L	G	S	Y	G	K	L	P	Q	A	Q	T	V	N	S	D	S	L	Q	S	V	K	L	P	A	G	L	S	S	Q	I	L	L	Q	R	P	D	I	M	E	A	E	H	A	L	M	A	A	N	A	N	I	G	A	A
Template Known Secondary structure																												T			S										G	G	G	B							T	T		B	G	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	G	H	L	P	T	L	D	L	T	A	S	T	G	I	S	D	T	S	Y	S	G	S	K	T	R	G	A	A	G	T	Q	Y	D	D	S	N	M	G	Q	N	K	V	G	L	S	F	S	L	P	I	Y	Q	G	G	M	V	N	S	Q	V	K	Q	A	Q	Y	N	F	V	G	A	S	E	Q	L	E	S	A	H
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	A	F	F	P	S	I	S	L	T	S	G	I	S	T	A	S	S	D	L	S	S	L	F	.	.	.	.	.	.	.	.	.	.	N	A	S	S	G	M	W	N	F	I	P	K	I	E	I	P	I	F	N	A	G	R	N	Q	A	N	L	D	I	A	E	I	R	Q	Q	Q	S	V	V	N	Y	E	Q	K	I
Template Known Secondary structure				T	T	S														S	S	S	T	T	S	S	.	.	.	.	.	.	.	.	.	.		T	T	T																T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.											.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	V	V	Q	T	V	R	S	S	F	N	N	I	N	A	S	I	S	S	I	N	A	Y	K	Q	A	V	V	S	A	Q	S	S	L	D	A	M	E	A	G	Y	S	V	G	T	R	T	I	V	D	V	L	D	A	T	T	T	L	Y	N	A	K	Q	E	L	A	N	A	R	Y	N	Y	L	I	N	Q	L	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	A	F	K	E	V	A	D	A	L	A	L	R	Q	S	L	N	D	Q	I	S	A	Q	Q	R	Y	L	A	S	L	Q	I	T	L	Q	R	A	R	A	L	Y	Q	H	G	A	V	S	Y	L	E	V	L	D	A	E	R	S	L	F	A	T	R	Q	T	L	L	D	L	N	Y	A	R	Q	V	N	E	I	S	L
Template Known Secondary structure																																													T	T	S	S		T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		423	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	A	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	A	L	G
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions