Return to main results Retrieve Phyre Job Id

Job DescriptionP02930
Confidence26.26%DateThu Jan 5 10:57:42 GMT 2012
Rank8Aligned Residues56
% Identity11%Templatec2l06A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide; PDBTitle: solution nmr structure of the pbs linker polypeptide domain (fragment2 254-400) of phycobilisome linker protein apce from synechocystis sp.3 pcc 6803. northeast structural genomics consortium target sgr209c
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   157..160.........170.........180.........190.........200.........210..
Predicted Secondary structure 



Query SS confidence 























































Query Sequence  RQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYY
Query Conservation              
     
   
          
         
   
  
 
   
Alig confidence 























































Template Conservation   
   







 







 



  

  
     
 
 


  





 
Template Sequence  QSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHILGRGP
Template Known Secondary structure  TT
S
TSTTTTS
TSS

Template Predicted Secondary structure 















Template SS confidence 























































   47..50.........60.........70.........80.........90.........100..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions