Job Description P02930 Confidence 100.00% Date Thu Jan 5 10:57:42 GMT 2012 Rank 5 Aligned Residues 392 % Identity 20% Template c1yc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein; PDBTitle: the crystal structure of the outer membrane protein vcec from the2 bacterial pathogen vibrio cholerae at 1.8 resolution Resolution 1.80 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		N	L	M	Q	V	Y	Q	Q	A	R	L	S	N	P	E	L	R	K	S	A	A	D	R	D	A	A	F	E	K	I	N	E	A	R	S	P	L	L	P	Q	L	G	L	G	A	D	Y	T	Y	S	N	.	.	.	.	.	G	Y	R	D	A	N	G	I	N	S	N	A	T	S	A	S	L	Q	L	T	Q	S	I	F
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.
Template Conservation
Template Sequence		Q	L	N	H	L	I	E	E	A	L	Q	H	S	P	S	L	C	M	A	M	A	R	L	K	G	A	Q	G	F	A	R	Q	A	G	A	I	R	S	F	D	L	G	L	A	A	S	A	T	E	S	K	V	S	E	R	Y	Q	S	A	T	P	P	D	G	W	N	D	Y	G	T	L	T	L	N	F	Q	Y	D	F	D
Template Known Secondary structure													S																							G	G	G	S																S	S	S	S		S	S				S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		99	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		D	M	S	K	W	R	.	A	L	T	L	Q	E	K	A	A	G	I	Q	D	V	T	Y	Q	T	D	Q	Q	T	L	I	L	N	T	A	T	A	Y	F	N	V	L	N	A	I	D	V	L	S	Y	T	Q	A	Q	K	E	A	I	Y	R	Q	L	D	Q	T	T	Q	R	F	N	V	G	L	V	A	I	T	D	V	Q
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		F	W	G	K	N	R	A	A	V	V	A	A	T	S	E	L	A	A	A	E	A	E	S	V	A	A	R	L	M	I	S	T	S	I	A	N	A	Y	A	E	L	A	R	L	Y	A	N	Q	E	T	V	H	A	A	L	Q	V	R	N	K	T	V	E	L	L	E	K	R	Y	A	N	G	L	E	T	L	G	S	V	S
Template Known Secondary structure		T	T	S																																																																				T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	R	A	Q	Y	D	T	V	L	A	N	E	V	T	A	R	N	N	L	D	N	A	V	E	Q	L	R	Q	I	T	G	N	Y	Y	P	E	L	A	A	L	N	V	E	N	F	K	T	D	K	P	Q	P	V	N	A	L	L	K	E	A	E	K	R	N	L	S	L	L	Q	A	R	L	S	Q	D	L	A	R	E
Query Conservation
Alig confidence																																																									.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		Q	A	K	A	V	A	A	S	V	E	A	E	L	L	G	I	Q	E	S	I	Q	L	Q	K	N	A	L	A	A	L	V	G	Q	G	P	D	R	A	A	S	I	E	E	P	H	I	T	L	T	S	R	Y	V	G	L	.	.	.	.	.	.	L	G	H	R	A	D	I	T	A	A	R	W	R	A	E	A	A	A	Q
Template Known Secondary structure																																T	T			G	G	G	G	G	G														G	G	.	.	.	.	.	.	G	T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290							.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	R	Q	A	Q	D	G	H	L	P	T	L	D	L	T	A	S	T	G	I	S	D	T	S	Y	S	G	S	K	T	R	G	A	A	G	T	Q	Y	D	D	S	N	M	G	Q	N	K	V	G	L	S	F	S	L	P	I	Y	Q	G	G	M	V	N	S	Q	V	K	Q	A	Q	Y	N	F	V	G	A	S	E	Q
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	G	I	A	Q	A	Q	F	Y	P	D	V	T	L	S	A	F	I	G	Y	Q	A	F	G	L	D	H	L	F	.	.	.	.	.	.	.	.	.	.	D	S	G	N	D	A	G	A	I	G	P	A	I	Y	L	P	L	F	T	G	G	R	L	E	G	Q	L	T	S	A	E	A	R	Y	Q	E	A	V	A	Q
Template Known Secondary structure									T	T	S															S	G	G	G	T	T	.	.	.	.	.	.	.	.	.	.	S	T	T																	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.											.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	A	H	R	S	V	V	Q	T	V	R	S	S	F	N	N	I	N	A	S	I	S	S	I	N	A	Y	K	Q	A	V	V	S	A	Q	S	S	L	D	A	M	E	A	G	Y	S	V	G	T	R	T	I	V	D	V	L	D	A	T	T	T	L	Y	N	A	K	Q	E	L	A	N	A	R	Y	N	Y	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	N	G	T	L	V	Q	A	L	H	E	I	A	D	V	V	T	S	S	Q	A	L	Q	A	R	I	N	K	T	E	Q	A	V	Q	Q	A	E	Q	A	L	H	I	A	T	N	R	Y	Q	G	G	L	A	T	Y	L	D	V	L	V	A	E	E	S	L	L	N	N	Q	R	A	L	V	N	L	Q	S	R	A	F	S
Template Known Secondary structure																																																	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	L	N	I	K	S	A	L	G	T	L	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	L	A	L	I	H	A	L	G	G	G	F	E
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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