Job Description P50466 Confidence 40.52% Date Thu Jan 5 12:04:47 GMT 2012 Rank 97 Aligned Residues 115 % Identity 17% Template c3lifA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:putative diguanylate cyclase (ggdef) with pas/pac domain; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase rphk1s-z16 Resolution 2.70 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	T	T	L	M	S	T	T	D	L	Q	S	Y	I	T	H	A	N	D	T	F	V	Q	V	S	G	Y	T	L	Q	E	L	Q	G	Q	P	H	N	M	V	R	H	P	D	M	P	K	A	A	F	A	D	M	W	F	T	L	K	K	G	E	P	W	S	G	I	V	K	N	R	R	K	N	G	D	H	Y	W	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Sequence		P	Q	L	S	D	V	A	I	L	D	A	D	G	Q	L	T	Y	A	S	V	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	A	L	D	N	S	D	R	S	Y	F	R	Y	H	R	A	N	D	D	H	T	L	L	I	T	G	P	I	Q	S	R	T	S	G	V	.	.	W	V
Template Known Secondary structure		T	T									T	T	S	B					S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B		T	T	S																							T	T	T			.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.
		96	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		R	A	N	A	V	P	M	V	R	.	E	G	K	I	S	G	Y	M	S	I	R	T	R	A	T	D	E	E	I	A	A	V	E	P	L	Y	K	A	L	N	A	G	R	T	S	K	R	I	H	K	G	L	V	V	R	K	G	W	L	G	K	L	P	S	L	P	L
Query Conservation											.
Alig confidence											.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	V	S	R	R	L	E	T	T	D	G	K	F	F	G	V	V	V	A	T	I	E	S	E	.	.	.	.	.	.	.	.	.	.	.	Y	F	S	T	F	Y	K	T	F	D	L	G	P	G	G	S	I	S	L	L	H	S	D	G	R	L	L	I	Q	W	P
Template Known Secondary structure											T	T															.	.	.	.	.	.	.	.	.	.	.							T	T	S				T	T								T	T	S	B						T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.												.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions