Return to main results Retrieve Phyre Job Id

Job DescriptionP50466
Confidence99.68%DateThu Jan 5 12:04:47 GMT 2012
Rank13Aligned Residues126
% Identity17%Templatec3gdiB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70........ .80.........90......
Predicted Secondary structure 























..




Query SS confidence 



























































. .

















Query Sequence  TLMSTTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEP. . WSGIVKNRRKNGDHYWVR
Query Conservation    
  

  
 
   
 
     


 




     
  
             
  
  ..   
     


    
 
Alig confidence 



























































..

















Template Conservation          

     
       

   

 
       

 
           
  
         
   
 
  

  
Template Sequence  IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLD
Template Known Secondary structure 
TTSB
TTS

TTSBTGGGB
TTTTTTT


TTS
Template Predicted Secondary structure 





























Template SS confidence 















































































   330.........340.........350.........360.........370.........380.........390.........400.........
 
   97..100.... .....110.........120..... ....130.........140....
Predicted Secondary structure  ..








.........
Query SS confidence 







. .




















. . . . . . . . .


















Query Sequence  ANAVPMVR. . EGKISGYMSIRTRATDEEIAA. . . . . . . . . VEPLYKALNAGRTSKRIHK
Query Conservation      

  .. 
          


      .........                   
Alig confidence 







..




















.........


















Template Conservation         
        


    
   
  
                
 
 
 
 
  
Template Sequence  TSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAPPCPEPSVQELTEQIHRLLMQPVP
Template Known Secondary structure 
TTT



SSS
TTS

SS


TTS


Template Predicted Secondary structure 





















Template SS confidence 


























































   410.........420.........430.........440.........450.........460........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions