Job Description P50466 Confidence 99.60% Date Thu Jan 5 12:04:47 GMT 2012 Rank 22 Aligned Residues 108 % Identity 19% Template c2pdtD_ PDB info PDB header:circadian clock protein Chain: D: PDB Molecule:vivid pas protein vvd; PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid Resolution 2.20 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.												.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	N	T	P	L	A	D	D	T	T	L	M	S	T	T	D	L	Q	S	Y	I	T	H	A	N	D	T	F	V	Q	V	S	G	Y	T	L	Q	E	L	Q	G	Q	P	H	N	M	V	R	H	P	D	M	P	.	.	.	.	.	.	.	.	.	.	.	K	A	A	F	A	D	M	W	F	T	L	K	K	G	E	P
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	V	D	T	S	C	A	L	I	L	C	D	L	K	Q	K	D	T	P	I	V	Y	A	S	E	A	F	L	Y	M	T	G	Y	S	N	A	E	V	L	G	R	N	C	R	F	L	Q	S	P	D	G	M	V	K	P	K	S	T	R	K	Y	V	D	S	N	T	I	N	T	M	R	K	A	I	D	R	N	A	E
Template Known Secondary structure			S			T	T	S	S						T	T	S	T	T																		S	T	T	T	T	T	S		G	G	G	G	G	S	T	T	S				T	T				S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		W	S	G	I	V	K	N	R	R	K	N	G	D	H	Y	W	V	R	A	N	A	V	P	M	V	R	.	E	G	K	I	S	G	Y	M	S	I	R	T	R
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		V	Q	V	E	V	V	N	F	K	K	N	G	Q	R	F	V	N	F	L	T	M	I	P	V	R	D	E	T	G	E	Y	R	Y	S	M	G	F	Q	C	E
Template Known Secondary structure											T	T																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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