Job Description P50466 Confidence 25.01% Date Thu Jan 5 12:04:47 GMT 2012 Rank 103 Aligned Residues 92 % Identity 10% Template c2p7jA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative sensory box/ggdef family protein; PDBTitle: crystal structure of the domain of putative sensory box/ggdef family2 protein from vibrio parahaemolyticus Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																		.																																																														.	.
Query SS confidence																		.																																																														.	.
Query Sequence		D	D	T	T	L	M	S	T	T	D	L	Q	S	Y	I	T	.	H	A	N	D	T	F	V	Q	V	S	G	Y	T	L	Q	E	L	Q	G	Q	P	H	N	M	V	R	H	P	D	M	P	K	A	A	F	A	D	M	W	F	T	L	K	K	G	E	P	W	S	G	I	V	K	N	R	R	K	N	G	D	H	.	.
Query Conservation																		.																																																														.	.
Alig confidence																		.																	.	.	.	.	.	.	.	.														.	.																							.	.
Template Conservation																																			.	.	.	.	.	.	.	.														.	.
Template Sequence		K	L	Y	K	Q	I	R	F	L	D	T	S	G	T	E	K	V	R	I	K	Y	D	F	K	T	S	I	A	G	P	S	L	I	.	.	.	.	.	.	.	.	L	R	D	K	S	A	R	E	Y	F	K	Y	A	.	.	Q	S	L	D	N	E	Q	I	S	A	W	G	I	E	L	E	R	D	K	G	E	L	V	Y
Template Known Secondary structure												T	T	S	B									T	T	T	T								.	.	.	.	.	.	.	.			B		T	T	S							.	.		T	S		T	T													T	T				S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.														.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.									.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
				93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Y	W	V	R	A	N	A	V	P	M	V	R	E	G	K	I	S	G	Y	M	S	I	R	T	R
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		P	L	S	P	S	L	R	I	L	X	P	I	S	V	N	D	V	R	Q	G	Y	L	V	L	N	V	D
Template Known Secondary structure		S														T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions