Job Description P50466 Confidence 99.56% Date Thu Jan 5 12:04:47 GMT 2012 Rank 30 Aligned Residues 182 % Identity 9% Template c1wa9A_ PDB info PDB header:circadian rhythm Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period Resolution 3.15 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	T	L	M	S	T	T	D	L	Q	S	Y	I	T	H	A	N	D	T	F	V	Q	V	S	G	Y	T	L	Q	E	L	Q	G	Q	P	H	N	M	V	R	H	P	D	M	P	K	A	A	F	A	D	M	W	F	T	L	K	K	G	E	P	W	S	G	I	V	K	N	R	R	K	N	G	D	H	Y	W	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	F	C	C	V	I	S	M	H	D	G	I	V	L	Y	T	T	P	S	I	T	D	V	L	G	Y	P	R	D	M	W	L	G	R	S	F	I	D	F	V	H	L	K	D	R	A	T	F	A	S	Q	I	T	T	G	I	A	K	S	T	F	C	V	M	L	R	R	Y	R	G	L	K	S	G	G	F	G	V	I
Template Known Secondary structure										T	T	T		B						T	T									T	T	S	S	T	T	S	B	G	G	G	G	B		T	T	T								T	T	S														S				S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.											.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	A	V	P	M	V	R	E	G	K	I	S	G	Y	M	S	I	R	T	R	A	T	D	E	E	I	A	.	.	.	.	.	.	.	.	.	.	A	V	E	P	L	Y	K	A	L	N	A	G	R	T	S	K	R	I	H	K	G	L	V	V	R	K	G	W	L	G	K	L	P	S	L	P	L	R	W	R	A	R
Query Conservation																														.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		G	R	P	V	S	.	.	.	.	Y	E	P	F	R	L	G	L	T	F	R	E	A	P	E	E	A	R	S	N	G	T	N	M	L	L	V	I	C	A	T	P	I	K	S	S	Y	K	V	P	D	E	I	L	S	Q	K	S	P	K	F	A	I	R	H	T	A	T	G	I	I	S	H	V	D	S	A	A	V	S	A
Template Known Secondary structure							.	.	.	.										B											S															S			S	T	T		B			T	T	S									T	T		B						G	G	G
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	M	T	L	M	F	I	L	L	A	A	M	L	W	F	V	A	A	P	V	V	T	Y	I	L	C	A	L	V	V	L	L	A	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	Y	L	P	Q	D	L	I	G	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G
Template Known Secondary structure										T	T	S	B	G	G	G	G	B		T	T	T															T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions