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Job DescriptionP50466
Confidence99.56%DateThu Jan 5 12:04:47 GMT 2012
Rank30Aligned Residues182
% Identity9%Templatec1wa9A_
PDB info PDB header:circadian rhythmChain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50.........60.........70.........80.........90......
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Query Sequence  DTTLMSTTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVR
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Template Sequence  DSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIAKSTFCVMLRRYRGLKSGGFGVI
Template Known Secondary structure 

TTT
B
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TTSSTTSBGGGGB
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S


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SSS
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   97..100.........110.........120.... .....130.........140.........150.........160......
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Query Sequence  ANAVPMVREGKISGYMSIRTRATDEEIA. . . . . . . . . . AVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLPLRWRAR
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Template Sequence  GRPVS. . . . YEPFRLGLTFREAPEEARSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSA
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   330.... .....340.........350.........360.........370.........380.........390.........400.....
 
   167..170.........180.........190.........200..
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Query Sequence  GVMTLMFILLAAMLWFVAAPVVTYILCALVVLLASA
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Template Sequence  LGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKG
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TTSBGGGGB
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   412.......420.........430.........440.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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