 |
| Job Description | P77564 | | Confidence | 2.25% | Date | Thu Jan 5 12:30:37 GMT 2012 |
| Rank | 77 | Aligned Residues | 20 |
| % Identity | 25% | Template | c1y4mC_ |
| PDB info |
PDB header:membrane protein | Chain: C: PDB Molecule:herv-frd_6p24.1 provirus ancestral env polyprotein; |
PDBTitle: crystal structure of human endogenous retrovirus herv-frd envelope2 protein (syncitin-2)
|
| Resolution | 1.60 Å |
|
| | |
117 | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
| Predicted Secondary structure | |
 | | | |
|
|
|
| | | | | | | | | | | | | | | |
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
S | L | Q | V | V | E | Q | D | I | C | R | A | I | A | H | A | V | R | F | E | C | Q | T | Y |
| Query Conservation | |
| | | | |
| |
| | | |
|
|
|
| |
|
| |
|
|
| |
|
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
| Template Conservation | |
|
| |
| | |
|
|
|
| | |
| |
| . | . | . | . | |
|
| |
|
| Template Sequence | |
M | L | T | A | A | Q | G | G | I | C | L | A | L | D | E | . |
. |
. |
. |
K | C | C | F | W |
| Template Known Secondary structure | |
| | T | G | G | G | T | S | | | | | T | T | S | . | . | . | . |
|
|
|
|
|
| Template Predicted Secondary structure | |
| | | | | |
|
|  |  | | | |
|
| . | . | . | . |
|
|
|
|
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
|
|
|
. | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
