Job Description P77555 Confidence 100.00% Date Thu Jan 5 12:30:32 GMT 2012 Rank 4 Aligned Residues 343 % Identity 27% Template c3i0pA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		M	K	I	S	R	E	T	L	H	Q	L	I	E	N	K	L	C	Q	A	G	L	K	R	E	H	A	A	T	V	A	E	V	L	V	Y	A	D	A	R	G	I	H	S	H	G	A	V	R	V	E	Y	.	Y	A	E	R	I	S	K	G	G	T	N	R	E	P	E	F	R	L	E	E	T	G	P	C	S	A	I	L
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		K	N	V	S	I	D	T	I	K	E	F	M	Y	Q	V	L	L	K	V	G	S	D	E	E	N	A	R	M	V	R	D	T	L	I	A	A	D	L	R	G	M	D	T	H	G	I	Q	R	F	K	T	V	Y	I	D	R	I	K	K	G	M	I	N	P	T	A	K	P	S	I	I	R	E	T	S	T	T	C	V	L
Template Known Secondary structure																				T	T																				T		T	T	S	S	G	G	G					T						T	T		S		T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	D	N	A	A	G	Q	V	A	A	K	M	G	M	E	H	A	I	K	T	A	Q	Q	N	G	V	A	V	V	G	I	S	R	M	G	H	S	G	A	I	S	Y	F	V	Q	Q	A	A	R	A	G	F	I	G	I	S	M	C	Q	S	D	P	M	V	V	P	F	G	G	A	E	I	Y	Y	G	T	N	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	N	N	G	F	G	H	V	N	G	T	I	G	M	K	M	A	I	E	K	A	K	K	Y	G	M	G	M	V	V	V	R	N	S	T	H	F	G	I	A	G	Y	Y	S	L	L	A	A	Q	E	G	C	I	G	I	C	G	T	N	A	R	S	S	V	A	A	T	F	G	D	E	P	I	L	G	T	N	P	L
Template Known Secondary structure				T	T																						S													S												T	T										S	S		B			T	T			S			B
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.								.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Query Sequence		A	F	A	A	P	G	E	G	D	E	I	L	T	F	D	M	A	T	T	V	Q	A	W	G	K	V	L	D	A	R	S	R	N	M	S	I	P	D	T	W	A	V	D	K	N	G	V	P	T	T	D	P	F	A	V	.	.	.	.	.	.	.	.	H	A	L	L	P	A	A	G	.	.	.	.	.	.	.	P	K
Query Conservation																																																									.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	G	I	P	S	D	E	A	F	P	Y	C	F	D	G	A	T	S	I	S	P	T	G	R	F	E	K	Y	V	R	M	G	K	T	V	D	K	S	W	A	S	M	K	G	G	K	P	I	E	D	P	K	E	L	L	E	N	Y	P	K	G	K	A	Y	L	H	P	L	G	G	S	D	E	V	S	G	S	H	K
Template Known Secondary structure								S	S	S	S								S	B	S	S											T	T					S	S	S				T	T	S		B			S								T	T	T	T	S					B	T	T		S	S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	G	L	M	M	M	I	D	V	L	S	G	V	L	L	G	L	P	F	G	R	Q	V	S	S	M	Y	D	D	L	H	A	G	R	N	L	G	Q	L	H	I	V	I	N	P	N	F	F	S	S	S	E	L	F	R	Q	H	L	S	Q	T	M	R	E	L	N	A	I	T	P	A	P	G	F	N	Q	V	Y	Y
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		G	Y	C	L	S	E	F	V	E	I	M	S	S	C	L	S	I	A	N	F	L	N	H	I	E	E	E	K	.	E	K	S	G	K	F	S	L	G	H	F	F	I	A	I	N	V	E	C	F	R	D	L	N	E	F	K	K	N	V	G	D	I	N	R	T	L	R	N	T	D	K	L	P	G	H	D	R	I	Y	T
Template Known Secondary structure															T	T	T	T				T	T							.				S	S												G	G	G	T	S																		T	S				T	T
Template Predicted Secondary structure																														.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	Q	D	Q	D	I	K	Q	R	K	A	A	V	E	G	I	E	I	V	D	D	I	Y	Q	Y	L	I	S	D	A	L	Y	N	T	S	Y	E	T	K	N	P	F
Query Conservation
Alig confidence																																			.	.	.
Template Conservation																																			.	.	.
Template Sequence		A	G	E	K	E	Y	E	T	E	Q	K	R	R	K	F	G	D	D	L	P	L	V	T	I	N	E	M	K	E	L	S	S	F	.	.	.	Y	N	V	P	L	P	F
Template Known Secondary structure		T	T																																.	.	.		T
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.				.	360	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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