Job Description P77555 Confidence 100.00% Date Thu Jan 5 12:30:32 GMT 2012 Rank 3 Aligned Residues 344 % Identity 27% Template c1z2iA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of agrobacterium tumefaciens malate2 dehydrogenase, new york structural genomics consortium Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	I	S	R	E	T	L	H	Q	L	I	E	N	K	L	C	Q	A	G	L	K	R	E	H	A	A	T	V	A	E	V	L	V	Y	A	D	A	R	G	I	H	S	H	G	A	V	R	V	E	Y	Y	A	E	R	I	S	K	G	G	T	N	R	E	P	E	F	R	L	E	E	T	G	P	C	S	A	I	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	A	R	L	D	E	L	E	R	F	C	R	A	V	F	L	A	V	G	T	D	E	E	T	A	D	A	A	T	R	A	M	M	H	G	T	R	L	G	V	D	S	H	G	V	R	L	L	A	H	Y	V	T	A	L	E	G	G	R	L	N	R	R	P	Q	I	S	R	V	S	G	F	G	A	V	E	T	I	D
Template Known Secondary structure																				T	T																			T	T		G	G	G	S	G	G	G											T	S	S		S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	N	A	A	G	Q	V	A	A	K	M	G	M	E	H	A	I	K	T	A	Q	Q	N	G	V	A	V	V	G	I	S	R	M	G	H	S	G	A	I	S	Y	F	V	Q	Q	A	A	R	A	G	F	I	G	I	S	M	C	Q	S	D	P	M	V	V	P	F	G	G	A	E	I	Y	Y	G	T	N	P	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	H	A	H	G	A	R	A	T	Y	A	A	M	E	N	A	M	A	L	A	E	K	F	G	I	G	A	V	A	I	R	N	S	S	H	F	G	P	A	G	A	Y	A	L	E	A	A	R	Q	G	Y	I	G	L	A	F	C	N	S	D	S	F	V	R	L	H	D	G	A	M	R	F	H	G	T	N	P	I	A
Template Known Secondary structure			S	S																						S													S		T										T	T	S									S			B			T	T		S	S			B
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		F	A	A	P	G	E	G	D	E	I	L	T	F	D	M	A	T	T	V	Q	A	W	G	K	V	L	D	A	R	S	R	N	M	S	I	P	D	T	W	A	V	D	K	N	G	V	P	T	T	D	P	F	A	V	H	A	L	L	P	A	A	G	.	.	.	P	K	G	Y	G	L	M	M	M	I	D	V	L	S	G
Query Conservation																																																																.	.	.
Alig confidence																																																																.	.	.
Template Conservation
Template Sequence		V	G	V	P	A	A	D	D	M	P	W	L	L	D	M	A	T	S	A	V	P	Y	N	R	V	L	L	Y	R	S	L	G	Q	Q	L	P	Q	G	V	A	S	D	G	D	G	V	D	T	R	D	P	N	A	V	E	M	L	A	P	V	G	G	E	F	G	F	K	G	A	A	L	A	G	V	V	E	I	F	S	A
Template Known Secondary structure							S	S	S									S	B	S	S		T										T					T	T	S				T	T	S		B		S		T	T	T						B	T	T	G	G	G																T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		V	L	L	G	L	P	F	G	R	Q	V	S	S	M	Y	D	.	D	L	H	A	G	R	N	L	G	Q	L	H	I	V	I	N	P	N	F	F	S	S	S	E	L	F	R	Q	H	L	S	Q	T	M	R	E	L	N	A	I	T	P	A	P	G	F	N	Q	V	Y	Y	P	G	Q	D	Q	D	I	K	Q	R	K	A
Query Conservation																		.
Alig confidence																		.																																														.
Template Conservation																																																																.
Template Sequence		V	L	T	G	M	R	L	S	F	D	L	A	P	M	G	G	P	D	F	S	T	P	R	G	L	G	A	F	V	L	A	L	K	P	E	A	F	L	E	R	D	V	F	D	E	S	M	K	R	Y	L	E	V	L	R	G	S	P	A	R	E	D	.	C	K	V	M	A	P	G	D	R	E	W	A	V	A	A	K	R
Template Known Secondary structure		T	T	T	S				G	G	G	S			S	S	S	S			S	S													G	G	G	T	S																			S			S	T	T	.						T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		A	V	E	G	I	E	I	V	D	D	I	Y	Q	Y	L	I	S	D	A	.	L	Y	N	T	S	Y	E	T	K	N
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		E	R	E	G	A	P	V	D	P	V	T	R	A	A	F	S	E	L	A	E	K	F	S	V	S	P	P	T	Y	H
Template Known Secondary structure				T																				T						B
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions