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Job DescriptionP77555
Confidence100.00%DateThu Jan 5 12:30:32 GMT 2012
Rank2Aligned Residues340
% Identity36%Templatec1vbiA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILH
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Template Sequence  MRWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLPVYVRRLEAGLVNPSPTLPL. EERGPVALLD
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TT

TT
GGGSGGGTT
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   1........10.........20.........30.........40.........50.........60......... 70.........
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  ADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLA
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Template Sequence  GEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGFVAWVTTNAEPDVVPFGGREKALGTNPLA
Template Known Secondary structure 
TTB
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  FAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLL
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Template Sequence  FAAPAPQG. ILVADLATSESAMGKVFLAREKGERIPPSWGVDREGSPTDDPHRVYALRPLGGPKGYALALLVEVLSGVLT
Template Known Secondary structure  TT.
SBSS
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   160....... ..170.........180.........190.........200.........210.........220.........230........
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  GLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEG
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Template Sequence  GAGVAHGIGRMYDEWDRPQDVGHFLLALDPGRFVGKEAFLERMGALWQALKATPPAPGHEEVFLPGELEARRRERALAEG
Template Known Secondary structure  TS

GGGS

TTT

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GGGTT
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   321........330.........340.......
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Query Sequence  IEIVDDIYQYLISDALYNTSYETKNPF
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Template Sequence  MALPERVVAELKALGER. . . . . YGVPW
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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