Job Description P77555 Confidence 100.00% Date Thu Jan 5 12:30:32 GMT 2012 Rank 2 Aligned Residues 340 % Identity 36% Template c1vbiA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	I	S	R	E	T	L	H	Q	L	I	E	N	K	L	C	Q	A	G	L	K	R	E	H	A	A	T	V	A	E	V	L	V	Y	A	D	A	R	G	I	H	S	H	G	A	V	R	V	E	Y	Y	A	E	R	I	S	K	G	G	T	N	R	E	P	E	F	R	L	E	E	T	G	P	C	S	A	I	L	H
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		M	R	W	R	A	D	F	L	S	A	W	A	E	A	L	L	R	K	A	G	A	D	E	P	S	A	K	A	V	A	W	A	L	V	E	A	D	L	R	G	V	G	S	H	G	L	L	R	L	P	V	Y	V	R	R	L	E	A	G	L	V	N	P	S	P	T	L	P	L	.	E	E	R	G	P	V	A	L	L	D
Template Known Secondary structure																				T	T																			T	T		G	G	G	S	G	G	G										T	T		S	B	S	S						.				T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	N	A	A	G	Q	V	A	A	K	M	G	M	E	H	A	I	K	T	A	Q	Q	N	G	V	A	V	V	G	I	S	R	M	G	H	S	G	A	I	S	Y	F	V	Q	Q	A	A	R	A	G	F	I	G	I	S	M	C	Q	S	D	P	M	V	V	P	F	G	G	A	E	I	Y	Y	G	T	N	P	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	H	G	F	G	P	R	V	A	L	K	A	V	E	A	A	Q	S	L	A	R	R	H	G	L	G	A	V	G	V	R	R	S	T	H	F	G	M	A	G	L	Y	A	E	K	L	A	R	E	G	F	V	A	W	V	T	T	N	A	E	P	D	V	V	P	F	G	G	R	E	K	A	L	G	T	N	P	L	A
Template Known Secondary structure			T	T	B																					S																									T	T										S			B			T	T		S	S			B
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	A	P	G	E	G	D	E	I	L	T	F	D	M	A	T	T	V	Q	A	W	G	K	V	L	D	A	R	S	R	N	M	S	I	P	D	T	W	A	V	D	K	N	G	V	P	T	T	D	P	F	A	V	H	A	L	L	P	A	A	G	P	K	G	Y	G	L	M	M	M	I	D	V	L	S	G	V	L	L
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		F	A	A	P	A	P	Q	G	.	I	L	V	A	D	L	A	T	S	E	S	A	M	G	K	V	F	L	A	R	E	K	G	E	R	I	P	P	S	W	G	V	D	R	E	G	S	P	T	D	D	P	H	R	V	Y	A	L	R	P	L	G	G	P	K	G	Y	A	L	A	L	L	V	E	V	L	S	G	V	L	T
Template Known Secondary structure							T	T		.								S	B	S	S												T					T	T	S				T	T	S		B		S		G	G	G						B	T	T	T															T	T	T	T
Template Predicted Secondary structure										.
Template SS confidence
		160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	P	F	G	R	Q	V	S	S	M	Y	D	D	L	H	A	G	R	N	L	G	Q	L	H	I	V	I	N	P	N	F	F	S	S	S	E	L	F	R	Q	H	L	S	Q	T	M	R	E	L	N	A	I	T	P	A	P	G	F	N	Q	V	Y	Y	P	G	Q	D	Q	D	I	K	Q	R	K	A	A	V	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	G	V	A	H	G	I	G	R	M	Y	D	E	W	D	R	P	Q	D	V	G	H	F	L	L	A	L	D	P	G	R	F	V	G	K	E	A	F	L	E	R	M	G	A	L	W	Q	A	L	K	A	T	P	P	A	P	G	H	E	E	V	F	L	P	G	E	L	E	A	R	R	R	E	R	A	L	A	E	G
Template Known Secondary structure		T	S			G	G	G	S			T	T	T			S	S													G	G	G	T	T																		T	S				T	T		S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	I	V	D	D	I	Y	Q	Y	L	I	S	D	A	L	Y	N	T	S	Y	E	T	K	N	P	F
Query Conservation
Alig confidence																			.	.	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		M	A	L	P	E	R	V	V	A	E	L	K	A	L	G	E	R	.	.	.	.	.	Y	G	V	P	W
Template Known Secondary structure																			.	.	.	.	.		T
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.						.	.	.	.	340

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions