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Job DescriptionP77555
Confidence100.00%DateThu Jan 5 12:30:32 GMT 2012
Rank10Aligned Residues327
% Identity34%Templatec1v9nA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILH
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Template Sequence  IRVPKDRLFSFIVRVLTKLGVPEEDAKIVADNLVXADLRGVESHGVQRLKRYVDGIISGGVNLHPKIRVIREGPSYALID
Template Known Secondary structure 
TT

TT
GGGSGGGTSSBSS


TT
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   12.......20.........30.........40.........50.........60.........70.........80.........90.
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  ADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLA
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Template Sequence  GDEGLGQVVGYRSXKLAIKKAKDTGIGIVIARNSNHYGIAGYYALXAAEEGXIGISXTNSRPLVAPTGGIERILGTNPIA
Template Known Secondary structure 
TTB
S


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   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   161........170.........180.........190.........200.........210.... .....220. ........230
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Query Sequence  FAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAV. . . HALLPAA. . . . . . . GPKGYGLMM
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Template Sequence  LAAPTKDK. PFLLDXATSVVPIGKLE. . . . . . . . . . . . WAINREGNITTKVEEVFNGGALLPLGGFGELLGGHKGYGLSL
Template Known Secondary structure 

SSS.

SBSS
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SSS


SSTTTTT

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BTT
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   172....... 180.........190...... ...200.........210.........220.........230........
 
   231........240.........250.........260.........270.........280.........290.........300.........310
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Query Sequence  MIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQD
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Template Sequence  XVDILSGILSGGTWSKYVKN. . . TSEKGSNVCHFFXVIDIEHFIPLEEFKEKISQXIEEIKSSRKHPEFERIWIHGEKGF
Template Known Secondary structure  TTTTTS

GGG


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GGGTS
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   251........260.........270 .........280.........290.........300.........310.........320.......
 
   311........320.........330.........340...
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Query Sequence  IKQRKAAVEGIEIVDDIYQYLISDALYNTSYET
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Template Sequence  LTXETRLKLGIPIYRKVLEELNEIAKRVGVEGL
Template Known Secondary structure 
TS


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   328.330.........340.........350.........360
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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