Job Description P77555 Confidence 100.00% Date Thu Jan 5 12:30:32 GMT 2012 Rank 10 Aligned Residues 327 % Identity 34% Template c1v9nA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3 Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	I	S	R	E	T	L	H	Q	L	I	E	N	K	L	C	Q	A	G	L	K	R	E	H	A	A	T	V	A	E	V	L	V	Y	A	D	A	R	G	I	H	S	H	G	A	V	R	V	E	Y	Y	A	E	R	I	S	K	G	G	T	N	R	E	P	E	F	R	L	E	E	T	G	P	C	S	A	I	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	V	P	K	D	R	L	F	S	F	I	V	R	V	L	T	K	L	G	V	P	E	E	D	A	K	I	V	A	D	N	L	V	X	A	D	L	R	G	V	E	S	H	G	V	Q	R	L	K	R	Y	V	D	G	I	I	S	G	G	V	N	L	H	P	K	I	R	V	I	R	E	G	P	S	Y	A	L	I	D
Template Known Secondary structure																				T	T																			T	T		G	G	G	S	G	G	G											T	S	S	B	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	N	A	A	G	Q	V	A	A	K	M	G	M	E	H	A	I	K	T	A	Q	Q	N	G	V	A	V	V	G	I	S	R	M	G	H	S	G	A	I	S	Y	F	V	Q	Q	A	A	R	A	G	F	I	G	I	S	M	C	Q	S	D	P	M	V	V	P	F	G	G	A	E	I	Y	Y	G	T	N	P	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	E	G	L	G	Q	V	V	G	Y	R	S	X	K	L	A	I	K	K	A	K	D	T	G	I	G	I	V	I	A	R	N	S	N	H	Y	G	I	A	G	Y	Y	A	L	X	A	A	E	E	G	X	I	G	I	S	X	T	N	S	R	P	L	V	A	P	T	G	G	I	E	R	I	L	G	T	N	P	I	A
Template Known Secondary structure			T	T	B																					S													S		T									T	T	T	S									S	S		B			T	T			S			B
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																								.	.	.								.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.								.	.	.	.	.	.	.
Query Sequence		F	A	A	P	G	E	G	D	E	I	L	T	F	D	M	A	T	T	V	Q	A	W	G	K	V	L	D	A	R	S	R	N	M	S	I	P	D	T	W	A	V	D	K	N	G	V	P	T	T	D	P	F	A	V	.	.	.	H	A	L	L	P	A	A	.	.	.	.	.	.	.	G	P	K	G	Y	G	L	M	M
Query Conservation																																																								.	.	.								.	.	.	.	.	.	.
Alig confidence										.																		.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.								.	.	.	.	.	.	.
Template Conservation										.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	P	T	K	D	K	.	P	F	L	L	D	X	A	T	S	V	V	P	I	G	K	L	E	.	.	.	.	.	.	.	.	.	.	.	.	W	A	I	N	R	E	G	N	I	T	T	K	V	E	E	V	F	N	G	G	A	L	L	P	L	G	G	F	G	E	L	L	G	G	H	K	G	Y	G	L	S	L
Template Known Secondary structure							S	S	S	.								S	B	S	S		T	T	T			.	.	.	.	.	.	.	.	.	.	.	.							S	S	S				S	S	T	T	T	T	T			B		B	T	T		S	S	S	T	T	S
Template Predicted Secondary structure										.																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.													.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	D	V	L	S	G	V	L	L	G	L	P	F	G	R	Q	V	S	S	M	Y	D	D	L	H	A	G	R	N	L	G	Q	L	H	I	V	I	N	P	N	F	F	S	S	S	E	L	F	R	Q	H	L	S	Q	T	M	R	E	L	N	A	I	T	P	A	P	G	F	N	Q	V	Y	Y	P	G	Q	D	Q	D
Query Conservation
Alig confidence																						.	.	.
Template Conservation																						.	.	.
Template Sequence		X	V	D	I	L	S	G	I	L	S	G	G	T	W	S	K	Y	V	K	N	.	.	.	T	S	E	K	G	S	N	V	C	H	F	F	X	V	I	D	I	E	H	F	I	P	L	E	E	F	K	E	K	I	S	Q	X	I	E	E	I	K	S	S	R	K	H	P	E	F	E	R	I	W	I	H	G	E	K	G	F
Template Known Secondary structure								T	T	T	T	T	S			G	G	G				.	.	.	T	T	S	T	T												G	G	G	T	S																		T	S				T	T		S					T	T
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	Q	R	K	A	A	V	E	G	I	E	I	V	D	D	I	Y	Q	Y	L	I	S	D	A	L	Y	N	T	S	Y	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	X	E	T	R	L	K	L	G	I	P	I	Y	R	K	V	L	E	E	L	N	E	I	A	K	R	V	G	V	E	G	L
Template Known Secondary structure																														T	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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