Job Description P0A6Z6 Confidence 25.95% Date Thu Jan 5 11:04:18 GMT 2012 Rank 26 Aligned Residues 107 % Identity 15% Template c2e1cA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex Resolution 2.10 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.									.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.
Query Sequence		L	D	S	L	S	Q	R	R	G	Y	N	N	R	S	E	A	I	R	D	I	.	.	.	.	.	.	.	.	L	R	S	A	L	A	Q	E	A	T	Q	Q	H	G	T	Q	G	F	A	V	L	S	Y	V	Y	E	H	E	K	R	D	L	A	S	R	I	V	S	T	Q	H	H	H	H	D	L	S	V	A	T	L	H
Query Conservation																						.	.	.	.	.	.	.	.
Alig confidence												.										.	.	.	.	.	.	.	.																												.	.	.
Template Conservation												.																																													.	.	.
Template Sequence		L	R	E	I	S	K	I	T	G	L	.	A	E	S	T	I	H	E	R	I	R	K	L	R	E	S	G	V	I	K	K	F	T	A	I	I	D	P	E	A	L	G	Y	S	M	L	A	F	I	L	V	K	V	K	A	.	.	.	G	K	Y	S	E	V	A	S	N	L	A	K	Y	P	E	I	V	E	V	Y	E	T
Template Known Secondary structure										T	S	.															T	T	S	S									G	G	G	G	T													T	.	.	.	T											T	S	T	T
Template Predicted Secondary structure												.																																													.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	I	N	H	D	D	C	L	E	I	A	V	L	K	G	D	M	G	D	V	Q	H	F	A	D	D	V	I	A	Q	R	G	V	R	H	G	H	L	Q	C	L
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	T	G	D	Y	D	M	V	V	K	I	R	T	K	N	S	E	E	L	N	N	F	L	D	L	I	G	S	I	P	G	V	E	G	T	H	T	M	I	V
Template Known Secondary structure		.	.	.	S	S	S	S	S								S	S														S	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions