 |
Job Description | P21362 | Confidence | 96.28% | Date | Thu Jan 5 11:38:08 GMT 2012 |
Rank | 47 | Aligned Residues | 142 |
% Identity | 13% | Template | c2c6rA_ |
PDB info |
PDB header:dna-binding protein | Chain: A: PDB Molecule:dna-binding stress response protein, dps family; |
PDBTitle: fe-soaked crystal structure of the dps92 from deinococcus2 radiodurans
|
Resolution | 2.1 Å |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | V | F | I | H | L | L | S | D | T | Y | S | A | E | K | Q | L | T | R | A | L | A | K | L | A | R | A | T | S | N | E | . |
. |
. |
K | L | S | Q | A | F | H | A | H | L | E | E | T | H | G | Q | I | E | R | I | D | Q | V | V | E | S | E | S | N | L | K | I | K | R | M | K | C | V | A | M | E | G | L | I | E | E |
Query Conservation |   |
|
|
|   |   |   |
|   |
|   |
|   |
|
|   |
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |
| . | . | . |   |
|
|   |   |
|   |   |
|   |   |
|
|   |   |
|
|   |
|
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |
|
|   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |
|   |
|   |   |
|   |   |
|
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |
|
|
|
|
|   |   |
|
|
| . |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . |
Template Sequence |   |
K | K | S | V | Q | A | L | Q | N | T | L | T | E | L | Q | A | L | Q | L | Q | T | K | Q | A | H | W | N | V | S | G | T | L | W | Y | T | L | H | E | L | L | Q | D | H | Y | E | G | I | S | K | F | A | D | D | V | A | E | R | Q | L | S | V | G | A | . |
S | S | D | G | R | A | I | T | I | V | A | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
46 | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | |
. | 110 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | N | E | V | I | E | S | T | E | K | N | E | V | R | D | A | A | L | I | A | A | A | Q | K | V | E | H | Y | E | I | A | S | Y | G | T | L | A | T | L | A | E | Q | L | G | Y | R | K | A | A | K | L | L | K | E | T | L | E | E | E | K | A | T | D | I | K | L | T | D | L | A | I | N | N |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |
|
|   |   |   |   |
|   |
|
|   |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|
| . |   |
|   |   |
|   |
|
|
|   |   |
|
|   |   |   |
|
|   |   |
|   |
|   |
|   |
|   |   |   |
Template Sequence |   |
. |
A | S | R | L | P | E | I | P | G | G | F | L | D | D | A | Q | V | I | Q | F | F | T | Y | Q | Y | E | T | V | G | Q | R | I | H | Q | R | V | G | D | V | E | K | . |
V | D | P | T | T | A | N | L | L | Q | E | V | E | H | I | I | E | K | Y | Q | W | Q | M | R | A | F | L | Q | N | T |
Template Known Secondary structure |   |
. | T |
|
| S |
|
|
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G |
|
|
|
Template Predicted Secondary structure |   |
. |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | |
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|