Job Description P75825 Confidence 100.00% Date Wed Jan 25 15:21:03 GMT 2012 Rank 1 Aligned Residues 544 % Identity 41% Template d1gnta_ SCOP info Prismane protein-like Prismane protein-like Hybrid cluster protein (prismane protein) Resolution 1.25

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	C	V	Q	C	E	Q	T	I	R	T	P	A	G	N	G	C	S	Y	A	Q	G	M	C	G	K	T	A	E	T	S	D	L	Q	D	L	L	I	A	A	L	Q	G	L	S	A	W	A	V	K	A	R	E	Y	G	I	I	N	H	D	V	D	S	F	A	P	R	A	F	F	S	T	L	T	N	V	N	F	D
Query Conservation
Alig confidence													.	.	.						.
Template Conservation													.	.	.						.
Template Sequence		M	F	C	F	Q	C	Q	E	T	A	K	.	.	.	N	T	G	C	T	.	V	K	G	M	C	G	K	P	E	E	T	A	N	L	Q	D	L	L	I	F	V	L	R	G	I	A	I	Y	G	E	K	L	K	E	L	G	Q	P	D	R	S	N	D	D	F	V	L	Q	G	L	F	A	T	I	T	N	A	N	W	D
Template Known Secondary structure				B			S	T	T		G	G	.	.	.	G	T		B	S	.	S	B		T	T			B																											T	T					T	T											T	S	T	T	T	B
Template Predicted Secondary structure													.	.	.						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	R	I	V	G	Y	A	R	E	A	I	A	L	R	E	A	L	K	A	Q	C	L	A	V	D	A	N	A	R	V	D	N	P	M	A	D	L	Q	L	V	S	D	D	L	G	E	L	Q	R	Q	A	A	E	F	T	P	N	K	D	K	A	A	I	G	E	N	I	L	G	L	R	L	L	C	L	Y	G	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	R	F	E	A	M	I	S	E	G	L	A	R	R	D	K	L	R	N	A	F	L	A	V	Y	K	A	K	N	G	K	D	F	S	E	P	L	P	E	A	A	T	W	T	G	D	S	T	A	F	A	E	K	A	K	S	V	G	I	L	A	T	E	N	E	D	V	R	S	L	R	E	L	L	I	I	G	L	K
Template Known Secondary structure																																S	S								G	G	G	T					G	G	G						T	T	S	S	G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	A	Y	M	E	H	A	H	V	L	G	Q	Y	D	N	D	I	Y	A	Q	Y	H	K	I	M	A	W	L	G	T	W	P	A	D	M	N	A	L	L	E	C	S	M	E	I	G	Q	M	N	F	K	V	M	S	I	L	D	A	G	E	T	G	K	Y	G	H	P	T	P	T	Q	V	N	V	K	A	T	A
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		G	V	A	A	Y	A	E	H	A	A	V	L	G	F	R	K	T	E	I	D	E	F	M	L	E	A	L	A	S	T	.	T	K	D	L	S	V	D	E	M	V	A	L	V	M	K	A	G	G	M	A	V	T	T	M	A	L	L	D	E	A	N	T	T	T	Y	G	N	P	E	I	T	Q	V	N	I	G	V	G	K
Template Known Secondary structure													T	T																	T	.	T	S																																												S			S
Template Predicted Secondary structure																																.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	C	I	L	I	S	G	H	D	L	K	D	L	Y	N	L	L	E	Q	T	E	G	T	G	V	N	V	Y	T	H	G	E	M	L	P	A	H	G	Y	P	E	L	R	K	F	K	H	L	V	G	N	Y	G	S	G	W	Q	N	Q	Q	V	E	F	A	R	F	P	G	P	I	V	M	T	S	N	C	I	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	G	I	L	I	S	G	H	D	L	K	D	M	A	E	L	L	K	Q	T	E	G	T	G	V	D	V	Y	T	H	G	E	M	L	P	A	N	Y	Y	P	A	F	K	K	Y	P	H	F	V	G	N	Y	G	G	S	W	W	Q	Q	N	P	E	F	E	S	F	N	G	P	I	L	L	T	T	N	C	L	V	P
Template Known Secondary structure		S							S	S													T	T	T	T							G	G	G	G	G	G	G	G						T		T	T						S			G	G	G										S					S	S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		321	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.							.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure					.																									.	.	.	.	.	.
Query SS confidence					.																									.	.	.	.	.	.
Query Sequence		P	T	V	.	G	A	Y	D	D	R	I	W	T	R	S	I	V	G	W	P	G	V	R	H	L	D	G	D	.	.	.	.	.	.	D	F	S	A	V	I	T	Q	A	Q	Q	M	A	G	F	P	Y	S	E	I	P	H	L	I	T	V	G	F	G	R	Q	T	L	L	G	A	A	D	T	L	I	D	L	V	S	R
Query Conservation					.																									.	.	.	.	.	.
Alig confidence					.																									.	.	.	.	.	.																				.
Template Conservation																																																							.
Template Sequence		L	K	K	E	N	T	Y	L	D	R	L	Y	T	T	G	V	V	G	Y	E	G	A	K	H	I	A	D	R	P	A	G	G	A	K	D	F	S	A	L	I	A	Q	A	K	K	C	P	P	P	V	E	I	E	.	T	G	S	I	V	G	G	F	A	H	H	Q	V	L	A	L	A	D	K	V	V	E	A	V	K	S
Template Known Secondary structure				T	T				G	G	G					T	T		B		T	T	S								T	T	S												T	T	S								.		S														T
Template Predicted Secondary structure																																																							.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	R	H	I	F	L	L	G	G	C	D	G	A	R	G	E	R	H	Y	F	T	D	F	A	T	S	V	P	D	D	C	L	I	L	T	L	A	C	G	K	Y	R	F	N	K	L	E	F	G	D	I	E	G	L	P	R	L	V	D	A	G	Q	C	N	D	A	Y	S	A	I	I	L	A	V	T	L	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	I	K	R	F	V	V	M	A	G	C	D	G	R	Q	K	S	R	S	Y	Y	T	E	V	A	E	N	L	P	K	D	T	V	I	L	T	A	G	C	A	K	Y	R	Y	N	K	L	N	L	G	D	I	G	G	I	P	R	V	L	D	A	G	Q	C	N	D	S	Y	S	L	A	V	I	A	L	K	L	K	E
Template Known Secondary structure		T	S									B				S		G	G	G										S		T	T							S	G	G	G	G	G	T	T	T	S						T	T			S						S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		474	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		K	L	G	C	.	G	V	N	D	L	P	L	S	L	V	L	S	W	F	E	Q	K	A	I	V	I	L	L	T	L	L	S	L	G	V	K	N	I	V	T	G	P	T	A	P	G	F	L	T	P	D	L	L	A	V	L	N	E	K	F	G	L	R	S	I	T	T	V	E	E	D	M	K	Q	L	L	S	A
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		V	F	G	L	D	D	I	N	D	L	P	V	S	Y	D	I	A	W	Y	E	Q	K	A	V	A	V	L	L	A	L	L	F	L	G	V	K	G	I	R	L	G	P	T	L	P	A	F	L	S	P	N	V	A	K	V	L	V	E	N	F	N	I	K	P	I	G	T	V	Q	D	D	I	A	A	M	M	A	G
Template Known Secondary structure			T	T		S		G	G	G	S	S									S													T	T			S					S	S			T	T																B														T	T
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.