Job Description P75825 Confidence 100.00% Date Wed Jan 25 15:21:03 GMT 2012 Rank 2 Aligned Residues 533 % Identity 42% Template d1gnla_ SCOP info Prismane protein-like Prismane protein-like Hybrid cluster protein (prismane protein) Resolution 1.25

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		M	F	C	V	Q	C	E	Q	T	I	R	T	P	A	G	N	G	C	S	Y	A	Q	G	M	C	G	K	T	A	E	T	S	D	L	Q	D	L	L	I	A	A	L	Q	G	L	S	A	W	A	V	K	A	R	E	Y	G	I	I	.	N	H	D	V	D	S	F	A	P	R	A	F	F	S	T	L	T	N	V	N	F
Query Conservation																																																												.
Alig confidence													.	.	.						.																																							.
Template Conservation													.	.	.						.
Template Sequence		M	F	C	Y	Q	C	Q	E	T	V	G	.	.	.	N	K	G	C	T	.	Q	V	G	V	C	G	K	K	P	E	T	A	A	L	Q	D	A	L	I	Y	V	T	K	G	L	G	Q	I	A	T	R	L	R	A	E	G	K	A	V	D	H	R	I	D	R	L	V	T	G	N	L	F	A	T	I	T	N	A	N	F
Template Known Secondary structure				B			S	T	T		G	G	.	.	.	G	T		B		.	S	S		T	T																														T	T																		T	S	T	T	T	B
Template Predicted Secondary structure													.	.	.						.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	P	R	I	V	G	Y	A	R	E	A	I	A	L	R	E	A	L	K	A	Q	C	L	A	V	D	A	N	A	R	V	D	N	P	M	A	D	L	Q	L	V	S	D	D	L	G	E	L	Q	R	Q	A	A	E	F	T	P	N	K	D	K	A	A	I	G	E	N	I	L	G	L	R	L	L	C	L	Y	G	L
Query Conservation
Alig confidence																									.	.	.	.	.	.																																		.	.	.
Template Conservation																									.	.	.	.	.	.																																		.	.	.
Template Sequence		D	D	D	I	L	A	E	R	V	R	M	T	C	A	A	K	K	E	L	A	A	S	L	.	.	.	.	.	.	T	D	K	S	G	L	S	D	A	A	L	W	E	A	S	E	K	S	A	M	L	A	K	A	G	T	V	G	V	M	A	T	T	.	.	.	D	D	D	V	R	S	L	R	W	L	I	T	F	G	L
Template Known Secondary structure																							T		.	.	.	.	.	.	S			T	T										S	S									T	T	T	S	G	G	G			.	.	.	S
Template Predicted Secondary structure																									.	.	.	.	.	.																																		.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	A	A	A	Y	M	E	H	A	H	V	L	G	Q	Y	D	N	D	I	Y	A	Q	Y	H	K	I	M	A	W	L	G	T	W	P	A	D	M	N	A	L	L	E	C	S	M	E	I	G	Q	M	N	F	K	V	M	S	I	L	D	A	G	E	T	G	K	Y	G	H	P	T	P	T	Q	V	N	V	K	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	M	A	A	Y	A	K	H	A	D	V	L	G	K	H	E	N	S	L	D	A	F	M	Q	E	A	L	A	K	T	L	D	D	S	L	S	V	A	D	L	V	A	L	T	L	E	T	G	K	F	G	V	S	A	M	A	L	L	D	A	A	N	T	G	T	Y	G	H	P	E	I	T	K	V	N	I	G	V	G
Template Known Secondary structure														T	T																	T	T		T	T																																											S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	K	C	I	L	I	S	G	H	D	L	K	D	L	Y	N	L	L	E	Q	T	E	G	T	G	V	N	V	Y	T	H	G	E	M	L	P	A	H	G	Y	P	E	L	R	K	F	K	H	L	V	G	N	Y	G	S	G	W	Q	N	Q	Q	V	E	F	A	R	F	P	G	P	I	V	M	T	S	N	C	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	P	G	I	L	I	S	G	H	D	L	R	D	L	E	M	L	L	K	Q	T	E	G	T	G	V	D	V	Y	T	H	S	E	M	L	P	A	H	Y	Y	P	A	F	K	K	Y	A	H	F	K	G	N	Y	G	N	A	W	W	K	Q	K	E	E	F	E	S	F	N	G	P	V	L	L	T	T	N	C	L	V
Template Known Secondary structure		S	S							S	S													T	T	T	T							G	G	G	G	G	G	G	G	S	G	G	G	G	G		T	T						S	S	S	G	G	G										S					S	S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.						.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		D	P	T	V	G	A	Y	D	D	R	I	W	T	R	S	I	V	G	W	P	G	V	R	H	L	D	G	D	.	.	.	.	.	D	F	S	A	V	I	T	Q	A	Q	Q	M	A	G	F	P	Y	S	E	I	P	H	L	I	T	V	G	F	G	R	Q	T	L	L	G	A	A	D	T	L	I	D	L	V	S	R	E
Query Conservation																														.	.	.	.	.
Alig confidence					.																									.	.	.	.	.																		.
Template Conservation					.																																															.
Template Sequence		P	P	K	.	D	S	Y	K	D	R	V	Y	T	T	G	I	V	G	F	T	G	C	K	H	I	P	G	E	I	G	E	H	K	D	F	S	A	I	I	A	H	A	K	T	C	P	A	P	T	E	.	I	E	S	G	E	I	I	G	G	F	A	H	N	Q	V	L	A	L	A	D	K	V	I	D	A	V	K	S	G
Template Known Secondary structure					.					T	T					T	T		B		T	T	S						S	S	S														T	S						.	S			S														T										T	T
Template Predicted Secondary structure					.																																															.
Template SS confidence
		311	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	R	H	I	F	L	L	G	G	C	D	G	A	R	G	E	R	H	Y	F	T	D	F	A	T	S	V	P	D	D	C	L	I	L	T	L	A	C	G	K	Y	R	F	N	K	L	E	F	G	D	I	E	G	L	P	R	L	V	D	A	G	Q	C	N	D	A	Y	S	A	I	I	L	A	V	T	L	A	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	K	K	F	V	V	M	A	G	C	D	G	R	A	K	S	R	S	Y	Y	T	D	F	A	E	G	L	P	K	D	T	V	I	L	T	A	G	C	A	K	Y	R	Y	N	K	L	N	L	G	D	I	G	G	I	P	R	V	L	D	A	G	Q	C	N	D	S	Y	S	L	A	V	I	A	L	K	L	K	E	V
Template Known Secondary structure		S									B				S		G	G	G										S		T	T							S	G	G	G	G	G	T	T	T	S						T	T			S						S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		475	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		L	G	C	.	G	V	N	D	L	P	L	S	L	V	L	S	W	F	E	Q	K	A	I	V	I	L	L	T	L	L	S	L	G	V	K	N	I	V	T	G	P	T	A	P	G	F	L	T	P	D	L	L	A	V	L	N	E	K	F	G	L	R	S	I	T	T	V	E	E	D	M	K	Q	L	L
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		F	G	L	E	D	V	N	D	L	P	I	V	Y	N	I	A	W	Y	E	Q	K	A	V	I	V	L	L	A	L	L	S	L	G	V	K	N	I	H	L	G	P	T	L	P	A	F	L	S	P	N	V	A	K	V	L	V	E	Q	F	N	I	G	G	I	T	S	P	Q	D	D	L	K	A	F	F
Template Known Secondary structure		T	T		S		G	G	G	S	S									S													T	T								S	S			T	T																B												T
Template Predicted Secondary structure
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.