Job Description P75825 Confidence 100.00% Date Wed Jan 25 15:21:03 GMT 2012 Rank 6 Aligned Residues 494 % Identity 21% Template c1jqkE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase; PDBTitle: crystal structure of carbon monoxide dehydrogenase from2 rhodospirillum rubrum Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		C	V	Q	C	E	Q	T	I	R	T	P	A	G	N	G	C	S	Y	A	Q	G	M	C	G	K	T	A	E	T	S	D	L	Q	D	L	L	I	A	A	L	Q	G	L	S	A	W	A	V	K	A	R	E	Y	G	I	I	N	H	D	V	D	S	F	A	P	.	R	A	F	F	S	T	L	T	N	V	N	F	D	S
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		C	R	I	C	L	K	G	P	C	R	I	D	P	F	G	E	G	P	K	Y	G	V	C	G	A	D	R	D	T	I	V	A	R	H	L	V	R	M	I	A	A	G	T	A	A	H	S	E	H	G	R	H	I	A	L	A	M	Q	H	I	S	Q	G	E	L	H	D	Y	S	I	R	D	E	A	K	L	Y	A	I	A
Template Known Secondary structure				S	S	T	T							S	S	S	S	S			B		T	T	S		B																																			T	T	T			S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	I	V	G	Y	A	R	E	A	I	A	L	R	E	A	L	K	A	Q	C	L	A	V	D	A	N	A	R	V	D	N	P	M	A	D	L	Q	L	V	S	D	D	L	G	E	L	Q	R	Q	A	A	E	F	T	P	N	K	D	K	A	A	I	G	E	N	I	L	G	L	R	L	L	C	L	Y	G	L	K	G
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template Sequence		K	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	A	T	E	G	R	G	L	L	A	I	V	G	D	L	A	A	I	T	L	G	D	F	Q	N	Q	D	Y	D	K	P	C	A	W	L	A	A	S	L	.	.	.	.	.
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				T	T			T														T	T	T				T	T	S									S	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template SS confidence
		130	.	.																																	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.																																																	.	.
Query SS confidence																															.																																																	.	.
Query Sequence		A	A	A	Y	M	E	H	A	H	V	L	G	Q	Y	D	N	D	I	Y	A	Q	Y	H	K	I	M	A	W	L	.	G	T	W	P	A	D	M	N	A	L	L	E	C	S	M	E	I	G	Q	M	N	F	K	V	M	S	I	L	D	A	G	E	T	G	K	Y	G	H	P	T	P	T	Q	V	N	V	K	A	.	.
Query Conservation																															.																																																	.	.
Alig confidence																															.																																																	.	.
Template Conservation
Template Sequence		T	P	R	R	V	K	R	L	G	D	L	G	L	L	P	H	N	I	D	A	S	V	A	Q	T	M	S	R	T	H	V	G	C	D	A	D	P	T	N	L	I	L	G	G	L	R	V	A	M	A	D	L	D	G	S	M	L	A	T	E	L	S	D	A	L	F	G	T	P	Q	P	V	V	S	A	A	N	L	G	V
Template Known Secondary structure													T		S		S													T	S	T	T	S																																												S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
				239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.												.	.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure		.	.																									.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence		.	.																									.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		.	.	T	A	G	K	C	I	L	I	S	G	H	D	L	K	D	L	Y	N	L	L	E	Q	T	E	.	.	.	.	.	.	.	.	.	.	.	G	T	G	V	N	V	Y	.	.	.	.	T	H	G	E	M	L	P	A	H	G	Y	P	E	L	R	K	F	K	H	L	V	G	N	Y	G	S	G	W	Q	N	Q	Q
Query Conservation		.	.																									.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence		.	.																									.	.	.	.	.	.	.	.	.	.	.								.	.	.	.													.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.						.	.	.	.	.	.
Template Sequence		M	K	R	G	A	V	N	I	A	V	N	G	H	N	P	M	L	S	D	I	I	C	D	V	A	A	D	L	R	D	E	A	I	A	A	G	A	A	E	G	I	N	I	I	G	I	C	C	T	G	H	E	V	M	M	R	H	G	V	P	.	.	.	.	.	.	.	L	A	T	N	Y	.	.	.	.	.	.	L	S
Template Known Secondary structure				T	T								S	S															T							T	T		T	T																		S				.	.	.	.	.	.	.					S	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.						.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.								.	.	.	.	.							.	.
		302	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.							.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.												.	.	.														.														.	.	.	.	.	.																				.
Query SS confidence												.	.	.												.	.	.														.														.	.	.	.	.	.																				.
Query Sequence		V	E	F	A	R	F	P	G	P	I	.	.	.	V	M	T	S	N	C	I	I	D	P	T	.	.	.	V	G	A	Y	D	D	R	I	W	T	R	S	I	.	V	G	W	P	G	V	R	H	L	D	G	D	D	.	.	.	.	.	.	F	S	A	V	I	T	Q	A	Q	Q	M	A	G	F	P	Y	S	E	I	.
Query Conservation												.	.	.												.	.	.														.														.	.	.	.	.	.																				.
Alig confidence												.	.	.												.	.	.														.														.	.	.	.	.	.																				.
Template Conservation
Template Sequence		Q	E	L	P	I	L	T	G	A	L	E	A	M	V	V	D	V	Q	C	I	M	P	S	L	P	R	I	A	E	C	F	H	T	Q	I	I	T	T	D	K	H	N	K	I	S	G	A	T	H	V	P	F	D	E	H	K	A	V	E	T	A	K	T	I	I	R	M	A	I	A	A	F	G	R	R	D	P	N	R	V
Template Known Secondary structure		S	S					T	T									S	S	S			T	T							T	S	S								T	T				T	T	S							G	G	G																	T	T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
							368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.										.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.			.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																		.	.
Query SS confidence		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																		.	.
Query Sequence		.	.	.	.	.	P	H	L	I	T	V	G	F	G	R	Q	T	L	L	G	A	.	.	.	.	.	.	.	.	.	A	D	T	L	I	D	L	V	S	R	E	K	L	R	H	I	F	L	L	G	G	C	D	G	A	R	G	E	R	H	Y	F	T	.	.	D	F	A	T	S	V	P	D	D	C	L	I	L	T	L
Query Conservation		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																		.	.
Alig confidence		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation
Template Sequence		A	I	P	A	F	K	Q	K	S	I	V	G	F	S	A	E	A	V	V	A	A	L	A	K	V	N	A	D	D	P	L	K	P	L	V	D	N	V	V	N	G	N	I	Q	G	I	V	L	F	V	G	C	N	T	T	K	V	Q	Q	D	S	A	Y	V	D	L	A	K	S	L	A	K	R	N	V	L	V	L	A	T
Template Known Secondary structure																									T	T		S	S		T											S	S	S												T	T	S		T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.																										.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	C	G	K	Y	R	F	N	K	L	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	I	E	G	L	P	R	L	V	D	A	G	Q	C	N	D	A	Y	S	A	I	I	L	A	V	T	L	A	E	K	L	G	C	G	V	N	D	L	P	L	S	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	C	A	A	G	A	F	A	K	A	G	L	M	T	S	E	A	T	T	Q	Y	A	G	E	G	L	K	G	V	L	S	A	I	G	T	A	A	G	L	G	G	P	L	P	L	V	M	H	M	G	S	C	V	D	N	S	R	A	V	A	L	A	T	A	L	A	N	K	L	G	V	D	L	S	D	L	P	L	V	A
Template Known Secondary structure												T		S	S								S															T	S	S	S	S				S						S	S	T	T															T	T			G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
			487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																.	.
Query SS confidence		.																																																.	.
Query Sequence		.	V	L	S	W	F	E	Q	K	A	I	V	I	L	L	T	L	L	S	L	G	V	K	N	I	V	T	G	P	T	A	P	G	F	L	T	P	D	L	L	A	V	L	N	E	K	F	G	.	.	L	R	S	I	T	T	V	E	E	D	M	K	Q	L
Query Conservation		.																																																.	.
Alig confidence		.																						.																										.	.
Template Conservation																								.
Template Sequence		S	A	P	E	C	M	S	E	K	A	L	A	I	G	S	W	A	V	T	I	G	L	.	P	T	H	V	G	S	V	P	P	V	I	G	S	Q	I	V	T	K	L	V	T	E	T	A	K	D	L	V	G	G	Y	F	I	V	D	T	D	P	K	S	A
Template Known Secondary structure				T	T			S														T		.					S	S			T	T	T	T										T						T	S							S
Template Predicted Secondary structure																								.
Template SS confidence
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.		.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.