Job Description P46481 Confidence 3.04% Date Wed Jan 25 15:20:56 GMT 2012 Rank 40 Aligned Residues 143 % Identity 12% Template c2b5fD_ PDB info PDB header:transport protein,membrane protein Chain: D: PDB Molecule:aquaporin; PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution Resolution 3.90 Å

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		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		F	W	R	T	T	L	S	C	I	L	G	T	L	F	W	L	W	T	G	W	T	S	G	S	G	A	M	V	M	I	A	V	V	T	S	L	A	M	R	L	P	N	P	R	M	V	A	I	D	F	I	Y	G	T	L	A	A	L	P	L	G	L	L	Y	F	L	V	I	I	P	N	T	Q	Q	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																														.	.	.																																												.	.	.	.	.	.
Template Conservation																														.	.	.
Template Sequence		G	I	A	W	A	F	G	G	M	I	F	V	L	V	Y	C	T	A	G	I	S	G	G	H	I	N	P	A	.	.	.	V	T	F	G	L	F	L	A	R	K	V	S	L	L	R	A	L	V	Y	M	I	A	Q	C	L	G	A	I	C	G	V	G	L	V	K	A	F	M	K	G	P	Y	N	Q	F	G	G	G	A
Template Known Secondary structure																			T	T	T	T					S			.	.	.							T	T	T	S	S																											S							S	G	G	G
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
														432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.						.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	M	L	L	L	C	I	S	L	A	V	L	G	F	F	L	G	I	E	V	Q	K	R	R	.	.	.	.	.	L	G	S	M	G	A	L	A	S	T	I	N	I	I	V	L	D	N	P	M	T	F	H	F	S	Q	F	L	D	S	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	V	A	L	G	Y	N	K	G	T	A	L	G	A	E	I	I	G	T	F	V	L	V	Y	T	V	F	S	A	T	D	P	K	H	V	P	I	L	A	P	L	P	I	G	F	A	V	F	M	V	H	L	A	T	I	P	I	T	G	T	G	I	N	P	A	R	S	F	G	A	A	V	I	F	N	S	N	K	V
Template Known Secondary structure						T	T	S																							T											S															T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
									486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	L	G	Q	I	V	G	C	V	L	A	F	T	V	I	L	L	V
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	D	D	Q	W	I	F	W	V	G	P	F	I	G	A	A	V	A	A	A	Y	H	Q	Y	V
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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