Return to main results Retrieve Phyre Job Id

Job DescriptionP46481
Confidence4.32%DateWed Jan 25 15:20:56 GMT 2012
Rank27Aligned Residues116
% Identity16%Templatec1ldaA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:glycerol uptake facilitator protein; PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   388.390.........400.........410.........420....... ..430..
Predicted Secondary structure 




...................................



Query SS confidence 







































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .




Query Sequence  AVVTSLAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NTQQS
Query Conservation   
   


    
         


 
   
      


................................... 
   
Alig confidence 







































...................................




Template Conservation 




    
 
       

 

 


 


     
                           
              
Template Sequence  AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAF
Template Known Secondary structure  S


GGGTTT

TTSGGGTTTS



TT

Template Predicted Secondary structure 

































Template SS confidence 















































































   70.........80.........90.........100.........110.........120.........130.........140.........
 
   433......440.........450.... .....460.........470.........480.........
Predicted Secondary structure 
........






...............
Query SS confidence 





















. . . . . . . .


































. . . . . . . . . . . . . . .
Query Sequence  MLLLCISLAVLGFFLGIEVQKR. . . . . . . . RLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQ. . . . . . . . . . . . . . .
Query Conservation 
 

 
 
    
         ........             

 
      
   


  

 ...............
Alig confidence 





















........


































...............
Template Conservation    
 
 
  
   
                   


 
          

   



  

 
                 
Template Sequence  AVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRD
Template Known Secondary structure 
TTSSS

GGGT




TTTTT
SSS
Template Predicted Secondary structure 




























Template SS confidence 















































































   150.........160.........170.........180.........190.........200.........210.........220.........
 
   490.........500...
Predicted Secondary structure  ...........
Query SS confidence  . . . . . . . . . . .













Query Sequence  . . . . . . . . . . . IVGCVLAFTVILLV
Query Conservation  ...........
 
   
 
   

Alig confidence  ...........













Template Conservation      


 


  

 

   
  
Template Sequence  IPYFLVPLFGPIVGAIVGAFAYRKL
Template Known Secondary structure  S
TT
Template Predicted Secondary structure 
Template SS confidence 
























   230.........240.........250....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions