 |
Job Description | P24188 | Confidence | 58.24% | Date | Thu Jan 5 11:41:05 GMT 2012 |
Rank | 107 | Aligned Residues | 90 |
% Identity | 12% | Template | c2jgnB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:atp-dependent rna helicase ddx3x; |
PDBTitle: ddx3 helicase domain
|
Resolution | 1.91 Å |
|
 |
  |   |
178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | E | Q | L | P | K | A | V | E | M | M | Q | A | H | K | D | K | K | I | V | M | Y | C | T | G | G | I | R | C | E | K | A | S | A | W | M | K | H | N | G | F | N | K | V | W | H | I | E | G | G | I | I | E | Y | A | R | K | A | R | E | Q | G | L | P | V | R | F | I | G | K | N | F | V | F | D | E | R | M | G | E |
Query Conservation |   |
  |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |
|
|   |
|
|
|   |
|   |
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   | . |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
| . | . | . |   |   |   |   |   |   |   |   | . | . | . |   |   |   |
Template Sequence |   |
S | D | K | R | S | F | L | L | D | L | L | N | A | T | G | S | . |
L | T | L | V | F | V | E | T | K | K | G | A | D | S | L | E | D | F | L | Y | H | E | G | Y | . |
A | C | T | S | I | H | G | D | R | S | Q | R | D | R | E | E | A | L | H | Q | F | . |
. |
. |
R | S | G | K | S | P | I | L | . |
. |
. |
V | A | T |
Template Known Secondary structure |   |
G | G |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . |
|  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | . | . | . |  | T | T | S | S |
|  |  | . | . | . |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|  | . | . | . |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
424 | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | |
440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | |
. | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | |
|
|
. | . | . | . | . | 490 | . | . | |
|
|
. | . | . |
  |
  |   |
258 | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | I | S | D | E | I | I | A | H | C | H | Q | C | G | A | P | C | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|   |
|
|   |
|   |   |
Template Sequence |   |
A | V | A | I | S | N | V | K | H | V | I | N | F | D | L | P | S | D |
Template Known Secondary structure |   |
S |
|
|
|
|
| B | S |  |  |  |  | S | S |
|
| S | S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
498 | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|