Job Description P52599 Confidence 99.95% Date Thu Jan 5 12:05:49 GMT 2012 Rank 2 Aligned Residues 255 % Identity 15% Template c3h9iB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																			.
Query SS confidence													.	.	.																			.
Query Sequence		D	M	I	S	T	D	D	A	Y	V	T	.	.	.	G	N	A	D	P	I	S	A	Q	V	S	G	S	V	T	V	V	N	.	H	K	D	T	N	Y	V	R	Q	G	D	I	L	V	S	L	D	K	T	D	A	T	I	A	L	N	K	A	K	N	N	L	A	N	I	V	R	Q	T	N	K	L	Y	L	Q	D	K
Query Conservation													.	.	.																			.
Alig confidence													.	.	.																			.																																												.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		T	F	A	Q	S	F	P	A	N	V	S	Y	N	E	Y	Q	Y	A	I	V	Q	A	R	A	A	G	F	I	D	K	V	Y	P	L	T	V	G	D	K	V	Q	K	G	T	P	L	L	D	L	T	I	P	D	W	V	E	A	Q	S	E	Y	L	L	L	R	E	T	G	G	T	A	T	Q	T	E	G	.	.	.	.
Template Known Secondary structure													B		T	T									S									S			S	S					T	T																								S										.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	S	A	E	V	A	S	A	R	I	Q	Y	Q	Q	S	L	E	D	Y	N	R	R	V	P	L	A	K	Q	G	V	I	S	K	E	T	L	E	H	T	K	D	T	L	I	S	S	K	A	A	L	N	A	A	I	Q	A	Y	K	A	N	K	A	L	V	M	N	T	P	L	N	R	Q	P	Q	V	V	E	A	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	E	R	L	R	L	A	G	M	P	E	A	D	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																			181	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	T	K	E	A	W	L	A	L	K	R	T	D	I	K	S	P	V	T	G	Y	I	A	Q	R	S	V	Q	V	G	E	T	V	S	P	G	Q	S	L	M	A	V	V	P	A	R	Q	M	W	V	N	A	N	F	K	E	T	Q	L	T	D	V	R	I	G	Q	S	V	N	I	I	S	D	L	Y	G	E	N	V
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		R	R	L	I	A	T	Q	K	I	Q	T	R	F	T	L	K	A	P	I	D	G	V	I	T	A	F	D	L	R	A	G	M	N	I	A	K	D	N	V	V	A	K	I	Q	G	M	D	P	V	W	V	T	A	A	I	P	E	S	I	A	W	L	V	K	D	A	S	Q	F	T	L	T	V	P	A	R	.	P	D	K
Template Known Secondary structure																			S	S					S						S	S					S											S																			G	G	G						S	S		.			S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	H	G	R	V	T	G	I	N	M	G	T	G	N	A	F	S	L	L	P	A	Q	N	A	T	G	N	W	I	K	I	V	Q	R	V	P	V	E	V	S	L	D	P	K	E	L	M	E	H	P	L	R	I	G	L	S	M	T	A	T	I	D	T	K	N	E	D	I	A	E	M	P	E	L	A	S	T	V	T
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		T	L	T	I	R	K	W	T	L	L	P	G	V	D	A	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	L	Q	L	R	L	E	V	D	N	A	D	E	A	.	.	.	L	K	P	G	M	N	A	W	L	Q	L	N	T	A	S	E	P	M	L	L	I	P	S	Q	A	L	I	D	T
Template Known Secondary structure																T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T												S	S		.	.	.			T	T												S							G	G	G		B		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	P	A	Y	T	S	K	A	L	V	I	D	T	S	P	I	E	K	E	I	S	N	I	I	S	H	N	G	Q
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		G	S	E	Q	R	V	I	T	V	.	.	D	A	D	G	R	F	V	P	K	R	V	A	V	F	Q	A	S	Q	G
Template Known Secondary structure		S	S								.	.		S	S	S														T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions