Job Description P52599 Confidence 99.96% Date Thu Jan 5 12:05:49 GMT 2012 Rank 1 Aligned Residues 257 % Identity 18% Template c3fppB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca Resolution 2.99 Å

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		41	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		D	M	I	S	T	D	D	A	Y	V	T	.	G	N	A	D	P	I	S	A	Q	V	S	G	S	V	T	V	V	N	H	K	D	T	N	Y	V	R	Q	G	D	I	L	V	S	L	D	K	T	D	A	T	I	A	L	N	K	A	K	N	N	L	A	N	I	V	R	Q	T	N	K	L	Y	L	Q	D	K	Q	Y	S
Query Conservation													.
Alig confidence													.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	S	V	L	A	T	G	K	L	D	A	L	R	K	V	D	V	G	A	Q	V	S	G	Q	L	K	T	L	S	V	A	I	G	D	K	V	K	K	D	Q	L	L	G	V	I	D	P	E	Q	A	E	N	Q	I	K	E	V	E	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	E	L	R
Template Known Secondary structure																						S	S											T	T		B			T	T																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.															.	.	110	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	V	A	S	A	R	I	Q	Y	Q	Q	S	L	E	D	Y	N	R	R	V	P	L	A	K	Q	G	V	I	S	K	E	T	L	E	H	T	K	D	T	L	I	S	S	K	A	A	L	N	A	A	I	Q	A	Y	K	A	N	K	A	L	V	M	N	T	P	L	N	R	Q	P	Q	V	V	E	A	A	D	A	T
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	R	Q	Q	A	E	A	E	L	K	L	A	R	V	T	Y	S	R	Q	Q	R	L	A	Q	T	Q	A	V	S	Q	Q	D	L	D	N	A	A	T	E	M	A	V	K	Q	A	Q	I	G	T	I	D	A	Q	I	K	R	N	Q	A	S	L	D	T	A	K	T	N	L	D	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																											S			S	T	T								T																																.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		K	E	A	W	L	A	L	K	R	T	D	I	K	S	P	V	T	G	Y	I	A	Q	R	S	V	Q	V	G	E	T	V	S	P	G	Q	.	.	.	S	L	M	A	V	V	P	A	R	Q	M	W	V	N	A	N	F	K	E	T	Q	L	T	D	V	R	I	G	Q	S	V	N	I	I	S	D	L	Y	G	E	N	V
Query Conservation																																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.																												.	.	.																																							.
Template Conservation		.	.	.	.	.	.	.	.																																																																					.
Template Sequence		.	.	.	.	.	.	.	.	Y	T	R	I	V	A	P	M	A	G	E	V	T	Q	I	T	T	L	Q	G	Q	T	V	I	A	A	Q	Q	A	P	N	I	L	T	L	A	D	M	S	A	M	L	V	K	A	Q	V	S	E	A	D	V	I	H	L	K	P	G	Q	K	A	W	F	T	V	L	G	D	.	Q	L	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T					S	S		S	B						S		S	S						S	S	S																					T	T	T	T	T	S			S	S								T	T	S	.	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																					.
Template SS confidence
										183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	H	G	R	V	T	G	I	N	M	G	T	G	N	A	F	S	L	L	P	A	Q	N	A	T	G	N	W	I	K	I	V	Q	R	V	P	V	E	V	S	L	D	P	K	E	L	M	E	H	P	L	R	I	G	L	S	M	T	A	T	I	D	T	K	N	E	D	I	A	E
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		R	Y	E	G	Q	I	K	D	V	L	P	T	P	E	K	V	N	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	Y	Y	A	R	F	E	V	P	N	P	N	G	L	.	.	.	L	R	L	D	M	T	A	Q	V	H	I	Q	L	T	D	V	K	N	V	L
Template Known Secondary structure										B		S	S				S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S		.	.	.			T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.															.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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